Package - libvcflib-tools

Package: libvcflib-tools
apt-get install libvcflib-tools

Manuals in package:

Documentations in package:

libvcflib-tools

Primary informations

Download package: http://deb.debian.org/debian/pool/main/libv/libvcflib/libvcflib-tools_1.0.12+dfsg-1_amd64.deb (Size: 593.9KiB)

Property	Value
Package	libvcflib-tools
Source	libvcflib
Version	1.0.12+dfsg-1
Installed-Size	3475
Maintainer	Debian Med Packaging Team
Architecture	amd64
Depends	libc6 (>= 2.38), libdisorder0 (>= 0.0.2), libfastahack0 (>= 0.0+git20160702.bbc645f), libgcc-s1 (>= 3.3.1), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 13.1), libtabixpp0t64 (>= 1.0.0), libvcflib2 (>= 1.0.12+dfsg), python3:any, r-base-core, r-cran-plyr, r-cran-ggplot2, r-cran-gridbase
Suggests	r-cran-pracma
Description	C++ library for parsing and manipulating VCF files (tools)
Description-md5	3c6aa663d50e327a61a903862665a649
Homepage	https://github.com/vcflib/vcflib
Section	science
Priority	optional
Filename	pool/main/libv/libvcflib/libvcflib-tools_1.0.12+dfsg-1_amd64.deb
Size	608172
MD5sum	8da64577667960f4f90b68d29c9bb626
SHA256	dcbe339cb71103f5cc6919ff73ce8e1bf69201c860e00a521fd5493c9455d267

Files in package

/usr/bin/vcf2tsv
/usr/bin/vcffilter
/usr/bin/vcffixup
/usr/bin/vcfkeepinfo
/usr/bin/vcflib
/usr/bin/vcfstreamsort
/usr/bin/vcfuniq
/usr/bin/vcfuniqalleles
/usr/lib/R/site-library/vcflib/plotBfst.R
/usr/lib/R/site-library/vcflib/plotHapLrt.R
/usr/lib/R/site-library/vcflib/plotHaplotypes.R
/usr/lib/R/site-library/vcflib/plotPfst.R
/usr/lib/R/site-library/vcflib/plotSmoothed.R
/usr/lib/R/site-library/vcflib/plotWCfst.R
/usr/lib/R/site-library/vcflib/plotXPEHH.R
/usr/lib/vcflib/bin/abba-baba
/usr/lib/vcflib/bin/bFst
/usr/lib/vcflib/bin/bed2region
/usr/lib/vcflib/bin/bgziptabix
/usr/lib/vcflib/bin/dumpContigsFromHeader
/usr/lib/vcflib/bin/genotypeSummary
/usr/lib/vcflib/bin/hapLrt
/usr/lib/vcflib/bin/iHS
/usr/lib/vcflib/bin/meltEHH
/usr/lib/vcflib/bin/normalize-iHS
/usr/lib/vcflib/bin/pFst
/usr/lib/vcflib/bin/pVst
/usr/lib/vcflib/bin/permuteGPAT++
/usr/lib/vcflib/bin/permuteSmooth
/usr/lib/vcflib/bin/plotHaps
/usr/lib/vcflib/bin/popStats
/usr/lib/vcflib/bin/segmentFst
/usr/lib/vcflib/bin/segmentIhs
/usr/lib/vcflib/bin/sequenceDiversity
/usr/lib/vcflib/bin/smoother
/usr/lib/vcflib/bin/vcf2bed.py
/usr/lib/vcflib/bin/vcf2dag
/usr/lib/vcflib/bin/vcf2fasta
/usr/lib/vcflib/bin/vcf2sqlite.py
/usr/lib/vcflib/bin/vcf2tsv
/usr/lib/vcflib/bin/vcf_strip_extra_headers
/usr/lib/vcflib/bin/vcfaddinfo
/usr/lib/vcflib/bin/vcfafpath
/usr/lib/vcflib/bin/vcfaltcount
/usr/lib/vcflib/bin/vcfannotate
/usr/lib/vcflib/bin/vcfannotategenotypes
/usr/lib/vcflib/bin/vcfbiallelic
/usr/lib/vcflib/bin/vcfbreakmulti
/usr/lib/vcflib/bin/vcfcat
/usr/lib/vcflib/bin/vcfcheck
/usr/lib/vcflib/bin/vcfclassify
/usr/lib/vcflib/bin/vcfclearid
/usr/lib/vcflib/bin/vcfclearinfo
/usr/lib/vcflib/bin/vcfcombine
/usr/lib/vcflib/bin/vcfcommonsamples
/usr/lib/vcflib/bin/vcfcomplex
/usr/lib/vcflib/bin/vcfcountalleles
/usr/lib/vcflib/bin/vcfcreatemulti
/usr/lib/vcflib/bin/vcfdistance
/usr/lib/vcflib/bin/vcfecho
/usr/lib/vcflib/bin/vcfentropy
/usr/lib/vcflib/bin/vcfevenregions
/usr/lib/vcflib/bin/vcffilter
/usr/lib/vcflib/bin/vcffirstheader
/usr/lib/vcflib/bin/vcffixup
/usr/lib/vcflib/bin/vcfflatten
/usr/lib/vcflib/bin/vcfgeno2alleles
/usr/lib/vcflib/bin/vcfgeno2haplo
/usr/lib/vcflib/bin/vcfgenosamplenames
/usr/lib/vcflib/bin/vcfgenosummarize
/usr/lib/vcflib/bin/vcfgenotypecompare
/usr/lib/vcflib/bin/vcfgenotypes
/usr/lib/vcflib/bin/vcfglbound
/usr/lib/vcflib/bin/vcfglxgt
/usr/lib/vcflib/bin/vcfgtcompare.sh
/usr/lib/vcflib/bin/vcfhetcount
/usr/lib/vcflib/bin/vcfhethomratio
/usr/lib/vcflib/bin/vcfindelproximity
/usr/lib/vcflib/bin/vcfindels
/usr/lib/vcflib/bin/vcfindex
/usr/lib/vcflib/bin/vcfinfo2qual
/usr/lib/vcflib/bin/vcfinfosummarize
/usr/lib/vcflib/bin/vcfintersect
/usr/lib/vcflib/bin/vcfjoincalls
/usr/lib/vcflib/bin/vcfkeepgeno
/usr/lib/vcflib/bin/vcfkeepinfo
/usr/lib/vcflib/bin/vcfkeepsamples
/usr/lib/vcflib/bin/vcfld
/usr/lib/vcflib/bin/vcfleftalign
/usr/lib/vcflib/bin/vcflength
/usr/lib/vcflib/bin/vcfmultiallelic
/usr/lib/vcflib/bin/vcfmultiway
/usr/lib/vcflib/bin/vcfmultiwayscripts
/usr/lib/vcflib/bin/vcfnobiallelicsnps
/usr/lib/vcflib/bin/vcfnoindels
/usr/lib/vcflib/bin/vcfnosnps
/usr/lib/vcflib/bin/vcfnulldotslashdot
/usr/lib/vcflib/bin/vcfnullgenofields
/usr/lib/vcflib/bin/vcfnumalt
/usr/lib/vcflib/bin/vcfoverlay
/usr/lib/vcflib/bin/vcfplotaltdiscrepancy.r
/usr/lib/vcflib/bin/vcfplotaltdiscrepancy.sh
/usr/lib/vcflib/bin/vcfplotsitediscrepancy.r
/usr/lib/vcflib/bin/vcfplottstv.sh
/usr/lib/vcflib/bin/vcfprimers
/usr/lib/vcflib/bin/vcfprintaltdiscrepancy.r
/usr/lib/vcflib/bin/vcfprintaltdiscrepancy.sh
/usr/lib/vcflib/bin/vcfqual2info
/usr/lib/vcflib/bin/vcfqualfilter
/usr/lib/vcflib/bin/vcfrandom
/usr/lib/vcflib/bin/vcfrandomsample
/usr/lib/vcflib/bin/vcfregionreduce
/usr/lib/vcflib/bin/vcfregionreduce_and_cut
/usr/lib/vcflib/bin/vcfregionreduce_pipe
/usr/lib/vcflib/bin/vcfregionreduce_uncompressed
/usr/lib/vcflib/bin/vcfremap
/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes
/usr/lib/vcflib/bin/vcfremovenonATGC
/usr/lib/vcflib/bin/vcfremovesamples
/usr/lib/vcflib/bin/vcfsample2info
/usr/lib/vcflib/bin/vcfsamplediff
/usr/lib/vcflib/bin/vcfsamplenames
/usr/lib/vcflib/bin/vcfsitesummarize
/usr/lib/vcflib/bin/vcfsnps
/usr/lib/vcflib/bin/vcfsort
/usr/lib/vcflib/bin/vcfstreamsort
/usr/lib/vcflib/bin/vcfuniq
/usr/lib/vcflib/bin/vcfuniqalleles
/usr/lib/vcflib/bin/vcfvarstats
/usr/lib/vcflib/bin/wcFst
/usr/lib/vcflib/scripts/bed2region
/usr/lib/vcflib/scripts/bgziptabix
/usr/lib/vcflib/scripts/plotBfst.R
/usr/lib/vcflib/scripts/plotHapLrt.R
/usr/lib/vcflib/scripts/plotHaplotypes.R
/usr/lib/vcflib/scripts/plotPfst.R
/usr/lib/vcflib/scripts/plotSmoothed.R
/usr/lib/vcflib/scripts/plotWCfst.R
/usr/lib/vcflib/scripts/plotXPEHH.R
/usr/lib/vcflib/scripts/plot_roc.r
/usr/lib/vcflib/scripts/vcf2bed.py
/usr/lib/vcflib/scripts/vcf2sqlite.py
/usr/lib/vcflib/scripts/vcf_strip_extra_headers
/usr/lib/vcflib/scripts/vcfbiallelic
/usr/lib/vcflib/scripts/vcfclearid
/usr/lib/vcflib/scripts/vcfclearinfo
/usr/lib/vcflib/scripts/vcfcomplex
/usr/lib/vcflib/scripts/vcffirstheader
/usr/lib/vcflib/scripts/vcfgtcompare.sh
/usr/lib/vcflib/scripts/vcfindelproximity
/usr/lib/vcflib/scripts/vcfindels
/usr/lib/vcflib/scripts/vcfjoincalls
/usr/lib/vcflib/scripts/vcfmultiallelic
/usr/lib/vcflib/scripts/vcfmultiway
/usr/lib/vcflib/scripts/vcfmultiwayscripts
/usr/lib/vcflib/scripts/vcfnobiallelicsnps
/usr/lib/vcflib/scripts/vcfnoindels
/usr/lib/vcflib/scripts/vcfnosnps
/usr/lib/vcflib/scripts/vcfnulldotslashdot
/usr/lib/vcflib/scripts/vcfplotaltdiscrepancy.r
/usr/lib/vcflib/scripts/vcfplotaltdiscrepancy.sh
/usr/lib/vcflib/scripts/vcfplotsitediscrepancy.r
/usr/lib/vcflib/scripts/vcfplottstv.sh
/usr/lib/vcflib/scripts/vcfprintaltdiscrepancy.r
/usr/lib/vcflib/scripts/vcfprintaltdiscrepancy.sh
/usr/lib/vcflib/scripts/vcfqualfilter
/usr/lib/vcflib/scripts/vcfregionreduce
/usr/lib/vcflib/scripts/vcfregionreduce_and_cut
/usr/lib/vcflib/scripts/vcfregionreduce_pipe
/usr/lib/vcflib/scripts/vcfregionreduce_uncompressed
/usr/lib/vcflib/scripts/vcfremovenonATGC
/usr/lib/vcflib/scripts/vcfsnps
/usr/lib/vcflib/scripts/vcfsort
/usr/lib/vcflib/scripts/vcfvarstats
/usr/share/doc/libvcflib-tools/changelog.Debian.gz
/usr/share/doc/libvcflib-tools/copyright
/usr/share/lintian/overrides/libvcflib-tools
/usr/share/man/man1/abba-baba.1.gz
/usr/share/man/man1/bFst.1.gz
/usr/share/man/man1/dumpContigsFromHeader.1.gz
/usr/share/man/man1/genotypeSummary.1.gz
/usr/share/man/man1/hapLrt.1.gz
/usr/share/man/man1/iHS.1.gz
/usr/share/man/man1/meltEHH.1.gz
/usr/share/man/man1/normalize-iHS.1.gz
/usr/share/man/man1/pFst.1.gz
/usr/share/man/man1/pVst.1.gz
/usr/share/man/man1/permuteGPAT++.1.gz
/usr/share/man/man1/permuteSmooth.1.gz
/usr/share/man/man1/plotHaps.1.gz
/usr/share/man/man1/popStats.1.gz
/usr/share/man/man1/pyvcflib.1.gz
/usr/share/man/man1/segmentFst.1.gz
/usr/share/man/man1/segmentIhs.1.gz
/usr/share/man/man1/sequenceDiversity.1.gz
/usr/share/man/man1/smoother.1.gz
/usr/share/man/man1/vcf2dag.1.gz
/usr/share/man/man1/vcf2fasta.1.gz
/usr/share/man/man1/vcf2tsv.1.gz
/usr/share/man/man1/vcfaddinfo.1.gz
/usr/share/man/man1/vcfafpath.1.gz
/usr/share/man/man1/vcfallelicprimitives.1.gz
/usr/share/man/man1/vcfaltcount.1.gz
/usr/share/man/man1/vcfannotate.1.gz
/usr/share/man/man1/vcfannotategenotypes.1.gz
/usr/share/man/man1/vcfbreakmulti.1.gz
/usr/share/man/man1/vcfcat.1.gz
/usr/share/man/man1/vcfcheck.1.gz
/usr/share/man/man1/vcfclassify.1.gz
/usr/share/man/man1/vcfcleancomplex.1.gz
/usr/share/man/man1/vcfcombine.1.gz
/usr/share/man/man1/vcfcommonsamples.1.gz
/usr/share/man/man1/vcfcountalleles.1.gz
/usr/share/man/man1/vcfcreatemulti.1.gz
/usr/share/man/man1/vcfdistance.1.gz
/usr/share/man/man1/vcfecho.1.gz
/usr/share/man/man1/vcfentropy.1.gz
/usr/share/man/man1/vcfevenregions.1.gz
/usr/share/man/man1/vcffilter.1.gz
/usr/share/man/man1/vcffixup.1.gz
/usr/share/man/man1/vcfflatten.1.gz
/usr/share/man/man1/vcfgeno2alleles.1.gz
/usr/share/man/man1/vcfgeno2haplo.1.gz
/usr/share/man/man1/vcfgenosamplenames.1.gz
/usr/share/man/man1/vcfgenosummarize.1.gz
/usr/share/man/man1/vcfgenotypecompare.1.gz
/usr/share/man/man1/vcfgenotypes.1.gz
/usr/share/man/man1/vcfglbound.1.gz
/usr/share/man/man1/vcfglxgt.1.gz
/usr/share/man/man1/vcfhetcount.1.gz
/usr/share/man/man1/vcfhethomratio.1.gz
/usr/share/man/man1/vcfindex.1.gz
/usr/share/man/man1/vcfinfo2qual.1.gz
/usr/share/man/man1/vcfinfosummarize.1.gz
/usr/share/man/man1/vcfintersect.1.gz
/usr/share/man/man1/vcfkeepgeno.1.gz
/usr/share/man/man1/vcfkeepinfo.1.gz
/usr/share/man/man1/vcfkeepsamples.1.gz
/usr/share/man/man1/vcfld.1.gz
/usr/share/man/man1/vcfleftalign.1.gz
/usr/share/man/man1/vcflength.1.gz
/usr/share/man/man1/vcflib-api.1.gz
/usr/share/man/man1/vcflib.1.gz
/usr/share/man/man1/vcfnulldotslashdot.1.gz
/usr/share/man/man1/vcfnullgenofields.1.gz
/usr/share/man/man1/vcfnumalt.1.gz
/usr/share/man/man1/vcfoverlay.1.gz
/usr/share/man/man1/vcfparsealts.1.gz
/usr/share/man/man1/vcfprimers.1.gz
/usr/share/man/man1/vcfqual2info.1.gz
/usr/share/man/man1/vcfrandom.1.gz
/usr/share/man/man1/vcfrandomsample.1.gz
/usr/share/man/man1/vcfremap.1.gz
/usr/share/man/man1/vcfremoveaberrantgenotypes.1.gz
/usr/share/man/man1/vcfremovesamples.1.gz
/usr/share/man/man1/vcfroc.1.gz
/usr/share/man/man1/vcfsample2info.1.gz
/usr/share/man/man1/vcfsamplediff.1.gz
/usr/share/man/man1/vcfsamplenames.1.gz
/usr/share/man/man1/vcfsitesummarize.1.gz
/usr/share/man/man1/vcfstats.1.gz
/usr/share/man/man1/vcfstreamsort.1.gz
/usr/share/man/man1/vcfuniq.1.gz
/usr/share/man/man1/vcfuniqalleles.1.gz
/usr/share/man/man1/vcfwave.1.gz
/usr/share/man/man1/wcFst.1.gz