Man page - vcfgenotypes(1)
Packages contas this manual
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- vcfgeno2alleles(1)
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- vcfroc(1)
Package: libvcflib-tools
apt-get install libvcflib-tools
apt-get install libvcflib-tools
Manuals in package:
Documentations in package:
Manual
| VCFGENOTYPES(1) | vcfgenotypes (VCF statistics) | VCFGENOTYPES(1) |
NAME
vcfgenotypes
SYNOPSIS
vcfgenotypes
DESCRIPTION
Report the genotypes for each sample, for each variant in the VCF. Convert the numerical represenation of genotypes provided by the GT field to a human-readable genotype format.
OPTIONS
EXAMPLES
-
Example:
**vcfgenotypes** samples/sample.vcf 19 111 A C A,C NA00001:A/A NA00002:A/A NA00003:A/C 19 112 A G A,G NA00001:A/A NA00002:A/A NA00003:A/G 20 14370 G A G,A NA00001:G/G NA00002:G/A NA00003:A/A 20 17330 T A T,A NA00001:T/T NA00002:T/A NA00003:T/T 20 1110696 A G,T A,G,T NA00001:G/T NA00002:G/T NA00003:T/T 20 1230237 T . T,. NA00001:T/T NA00002:T/T NA00003:T/T 20 1234567 G GA,GAC G,GA,GAC NA00001:G/GA NA00002:G/GAC NA00003:GA/GA 20 1235237 T . T,. NA00001:T/T NA00002:T/T NA00003:./. X 10 AC A,ATG AC,A,ATG NA00001:AC NA00002:AC/A NA00003:AC/ATG Type: statistics
EXIT VALUES
- 0
- Success
- not 0
- Failure
SEE ALSO
vcflib(1)
OTHER
LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.
AUTHORS
Erik Garrison and vcflib contributors.
| vcfgenotypes (vcflib) |