Man page - vcfgenotypes(1)

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Manual

VCFGENOTYPES

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
EXAMPLES
EXIT VALUES
SEE ALSO
OTHER
LICENSE
AUTHORS

NAME

vcfgenotypes

SYNOPSIS

vcfgenotypes

DESCRIPTION

Report the genotypes for each sample, for each variant in the VCF. Convert the numerical represenation of genotypes provided by the GT field to a human-readable genotype format.

OPTIONS

EXAMPLES

Example:

      **vcfgenotypes** samples/sample.vcf

19      111     A       C       A,C     NA00001:A/A     NA00002:A/A     NA00003:A/C
19      112     A       G       A,G     NA00001:A/A     NA00002:A/A     NA00003:A/G
20      14370   G       A       G,A     NA00001:G/G     NA00002:G/A     NA00003:A/A
20      17330   T       A       T,A     NA00001:T/T     NA00002:T/A     NA00003:T/T
20      1110696 A       G,T     A,G,T   NA00001:G/T     NA00002:G/T     NA00003:T/T
20      1230237 T       .       T,.     NA00001:T/T     NA00002:T/T     NA00003:T/T
20      1234567 G       GA,GAC  G,GA,GAC        NA00001:G/GA    NA00002:G/GAC   NA00003:GA/GA
20      1235237 T       .       T,.     NA00001:T/T     NA00002:T/T     NA00003:./.
X       10      AC      A,ATG   AC,A,ATG        NA00001:AC      NA00002:AC/A    NA00003:AC/ATG

Type: statistics

EXIT VALUES

	0		Success
	not 0		Failure

OTHER

LICENSE

AUTHORS

Erik Garrison and vcflib contributors.