Man page - vcf2fasta(1)
Packages contains this manual
- vcflib-api(1)
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- vcfclassify(1)
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- vcf2fasta(1)
- vcflength(1)
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- vcfstats(1)
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- abba-baba(1)
- vcfcleancomplex(1)
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Package: libvcflib-tools
apt-get install libvcflib-tools
apt-get install libvcflib-tools
Manuals in package:
Documentations in package:
Manual
VCF2FASTA
NAMESYNOPSIS
DESCRIPTION
OPTIONS
EXIT VALUES
SEE ALSO
OTHER
LICENSE
AUTHORS
NAME
vcf2fasta
SYNOPSIS
vcf2fasta options [file]
DESCRIPTION
Generates sample_seq:N.fa for each sample, reference sequence, and chromosomal copy N in [0,1... ploidy]. Each sequence in the fasta file is named using the same pattern used for the file name, allowing them to be combined.
OPTIONS
options:
-f, --reference REF Use this reference when decomposing samples.
-p, --prefix PREFIX Affix this output prefix to each file, none by default
-P, --default-ploidy N Set a default ploidy for samples which do not have
information in the first record (2).
-n VAL Set string value to output for missing calls
Type: transformation
EXIT VALUES
|
0 |
Success |
|||
|
not 0 |
Failure |
SEE ALSO
vcflib (1)
OTHER
LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.
AUTHORS
Erik Garrison and vcflib contributors.