Man page - vcfflatten(1)
Packages contains this manual
- vcflib-api(1)
- vcfannotategenotypes(1)
- vcfcat(1)
- vcfgeno2alleles(1)
- vcfroc(1)
- vcfhethomratio(1)
- vcfcountalleles(1)
- vcfaddinfo(1)
- vcfrandomsample(1)
- vcfbreakmulti(1)
- vcfcheck(1)
- vcfsitesummarize(1)
- vcfdistance(1)
- vcfglbound(1)
- pyvcflib(1)
- vcfinfosummarize(1)
- vcflib(1)
- vcfnumalt(1)
- vcfsample2info(1)
- vcfkeepgeno(1)
- vcfgeno2haplo(1)
- vcfallelicprimitives(1)
- vcfindex(1)
- vcfecho(1)
- vcfwave(1)
- vcf2tsv(1)
- vcffixup(1)
- vcfremap(1)
- vcfnullgenofields(1)
- vcfoverlay(1)
- vcfremoveaberrantgenotypes(1)
- vcfflatten(1)
- vcfintersect(1)
- vcfprimers(1)
- vcfgenosamplenames(1)
- vcfafpath(1)
- vcfinfo2qual(1)
- vcfparsealts(1)
- vcffilter(1)
- vcfuniqalleles(1)
- vcfgenotypes(1)
- vcfsamplenames(1)
- vcfaltcount(1)
- vcfcombine(1)
- vcfuniq(1)
- vcf2dag(1)
- vcfgenotypecompare(1)
- vcfhetcount(1)
- vcfclassify(1)
- vcfkeepsamples(1)
- vcf2fasta(1)
- vcflength(1)
- vcfleftalign(1)
- vcfcommonsamples(1)
- vcfglxgt(1)
- vcfentropy(1)
- vcfrandom(1)
- vcfcreatemulti(1)
- vcfnulldotslashdot(1)
- vcfgenosummarize(1)
- vcfstats(1)
- vcfannotate(1)
- smoother(1)
- vcfstreamsort(1)
- vcfevenregions(1)
- vcfld(1)
- vcfkeepinfo(1)
- vcfqual2info(1)
- vcfremovesamples(1)
- abba-baba(1)
- vcfcleancomplex(1)
- vcfsamplediff(1)
Package: libvcflib-tools
apt-get install libvcflib-tools
apt-get install libvcflib-tools
Manuals in package:
Documentations in package:
Manual
VCFFLATTEN
NAMESYNOPSIS
DESCRIPTION
OPTIONS
EXIT VALUES
SEE ALSO
OTHER
LICENSE
AUTHORS
NAME
vcfflatten
SYNOPSIS
vcfflatten [options][file] -h –help display this help message and exit. -i –ignore-errors do not flatten locus if ‘AF’ is not specified.
DESCRIPTION
Removes multi-allelic sites by picking the most common alternate. Requires allele frequency specification ‘AF’ and use of ‘G’ and ‘A’ to specify the fields which vary according to the Allele or Genotype. VCF file may be specified on the command line or piped as stdin.
OPTIONS
Type: transformation
EXIT VALUES
|
0 |
Success |
|||
|
not 0 |
Failure |
SEE ALSO
vcflib (1)
OTHER
LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.
AUTHORS
Erik Garrison and vcflib contributors.