Man page - vcfroc(1)
Packages contas this manual
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- vcfgeno2alleles(1)
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- vcfhetcount(1)
- vcfafpath(1)
- vcfroc(1)
Package: libvcflib-tools
apt-get install libvcflib-tools
apt-get install libvcflib-tools
Manuals in package:
Documentations in package:
Manual
| VCFROC(1) | vcfroc (VCF statistics) | VCFROC(1) |
NAME
vcfroc
SYNOPSIS
vcfroc options []
DESCRIPTION
Generates a pseudo-ROC curve using sensitivity and specificity estimated against a putative truth set. Thresholding is provided by successive QUAL cutoffs.
OPTIONS
-
options:
-t, --truth-vcf FILE use this VCF as ground truth for ROC generation
-w, --window-size N compare records up to this many bp away (default 30)
-c, --complex directly compare complex alleles, don't parse into primitives
-r, --reference FILE FASTA reference file
EXIT VALUES
- 0
- Success
- not 0
- Failure
SEE ALSO
vcflib(1)
OTHER
LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.
AUTHORS
Erik Garrison and vcflib contributors.
| vcfroc (vcflib) |