Man page - vcfnullgenofields(1)
Packages contas this manual
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- vcfdistance(1)
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- vcfgeno2alleles(1)
- vcfrandomsample(1)
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- vcfroc(1)
Package: libvcflib-tools
apt-get install libvcflib-tools
apt-get install libvcflib-tools
Manuals in package:
Documentations in package:
Manual
| VCFNULLGENOFIELDS(1) | vcfnullgenofields (VCF transformation) | VCFNULLGENOFIELDS(1) |
NAME
vcfnullgenofields
SYNOPSIS
vcfnullgenofields options
DESCRIPTION
Makes the FORMAT for each variant line the same (uses all the FORMAT fields described in the header). Fills out per-sample fields to match FORMAT. Expands GT values of `.' with number of alleles based on ploidy (eg: `./.' for dipolid).
OPTIONS
-
options:
-p, --ploidy N the polidy of missing/null GT fields (default=2)
-L, --expand_GL fill in missing GL fields with 0 values (eg: 0,0,0 for diploid 2 alleles) Type: transformation
EXIT VALUES
- 0
- Success
- not 0
- Failure
SEE ALSO
vcflib(1)
OTHER
LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.
AUTHORS
Erik Garrison and vcflib contributors.
| vcfnullgenofields (vcflib) |