Man page - vcfnullgenofields(1)
Packages contains this manual
- vcflib-api(1)
- vcfannotategenotypes(1)
- vcfcat(1)
- vcfgeno2alleles(1)
- vcfroc(1)
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- vcfindex(1)
- vcfecho(1)
- vcfwave(1)
- vcf2tsv(1)
- vcffixup(1)
- vcfremap(1)
- vcfnullgenofields(1)
- vcfoverlay(1)
- vcfremoveaberrantgenotypes(1)
- vcfflatten(1)
- vcfintersect(1)
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- vcfparsealts(1)
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- vcfuniqalleles(1)
- vcfgenotypes(1)
- vcfsamplenames(1)
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- vcf2dag(1)
- vcfgenotypecompare(1)
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- vcfclassify(1)
- vcfkeepsamples(1)
- vcf2fasta(1)
- vcflength(1)
- vcfleftalign(1)
- vcfcommonsamples(1)
- vcfglxgt(1)
- vcfentropy(1)
- vcfrandom(1)
- vcfcreatemulti(1)
- vcfnulldotslashdot(1)
- vcfgenosummarize(1)
- vcfstats(1)
- vcfannotate(1)
- smoother(1)
- vcfstreamsort(1)
- vcfevenregions(1)
- vcfld(1)
- vcfkeepinfo(1)
- vcfqual2info(1)
- vcfremovesamples(1)
- abba-baba(1)
- vcfcleancomplex(1)
- vcfsamplediff(1)
Package: libvcflib-tools
apt-get install libvcflib-tools
apt-get install libvcflib-tools
Manuals in package:
Documentations in package:
Manual
VCFNULLGENOFIELDS
NAMESYNOPSIS
DESCRIPTION
OPTIONS
EXIT VALUES
SEE ALSO
OTHER
LICENSE
AUTHORS
NAME
vcfnullgenofields
SYNOPSIS
vcfnullgenofields options
DESCRIPTION
Makes the FORMAT for each variant line the same (uses all the FORMAT fields described in the header). Fills out per-sample fields to match FORMAT. Expands GT values of ‘.’ with number of alleles based on ploidy (eg: ‘./.’ for dipolid).
OPTIONS
options:
-p, --ploidy N the polidy of missing/null GT fields (default=2)
-L, --expand_GL fill in missing GL fields with 0 values (eg: 0,0,0 for diploid 2 alleles)
Type: transformation
EXIT VALUES
|
0 |
Success |
|||
|
not 0 |
Failure |
SEE ALSO
vcflib (1)
OTHER
LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.
AUTHORS
Erik Garrison and vcflib contributors.