Man page - vcfsamplediff(1)
Packages contains this manual
- vcflib-api(1)
- vcfannotategenotypes(1)
- vcfcat(1)
- vcfgeno2alleles(1)
- vcfroc(1)
- vcfhethomratio(1)
- vcfcountalleles(1)
- vcfaddinfo(1)
- vcfrandomsample(1)
- vcfbreakmulti(1)
- vcfcheck(1)
- vcfsitesummarize(1)
- vcfdistance(1)
- vcfglbound(1)
- pyvcflib(1)
- vcfinfosummarize(1)
- vcflib(1)
- vcfnumalt(1)
- vcfsample2info(1)
- vcfkeepgeno(1)
- vcfgeno2haplo(1)
- vcfallelicprimitives(1)
- vcfindex(1)
- vcfecho(1)
- vcfwave(1)
- vcf2tsv(1)
- vcffixup(1)
- vcfremap(1)
- vcfnullgenofields(1)
- vcfoverlay(1)
- vcfremoveaberrantgenotypes(1)
- vcfflatten(1)
- vcfintersect(1)
- vcfprimers(1)
- vcfgenosamplenames(1)
- vcfafpath(1)
- vcfinfo2qual(1)
- vcfparsealts(1)
- vcffilter(1)
- vcfuniqalleles(1)
- vcfgenotypes(1)
- vcfsamplenames(1)
- vcfaltcount(1)
- vcfcombine(1)
- vcfuniq(1)
- vcf2dag(1)
- vcfgenotypecompare(1)
- vcfhetcount(1)
- vcfclassify(1)
- vcfkeepsamples(1)
- vcf2fasta(1)
- vcflength(1)
- vcfleftalign(1)
- vcfcommonsamples(1)
- vcfglxgt(1)
- vcfentropy(1)
- vcfrandom(1)
- vcfcreatemulti(1)
- vcfnulldotslashdot(1)
- vcfgenosummarize(1)
- vcfstats(1)
- vcfannotate(1)
- smoother(1)
- vcfstreamsort(1)
- vcfevenregions(1)
- vcfld(1)
- vcfkeepinfo(1)
- vcfqual2info(1)
- vcfremovesamples(1)
- abba-baba(1)
- vcfcleancomplex(1)
- vcfsamplediff(1)
Package: libvcflib-tools
apt-get install libvcflib-tools
apt-get install libvcflib-tools
Manuals in package:
Documentations in package:
Manual
VCFSAMPLEDIFF
NAMESYNOPSIS
DESCRIPTION
OPTIONS
EXIT VALUES
SEE ALSO
OTHER
LICENSE
AUTHORS
NAME
vcfsamplediff
SYNOPSIS
vcfsamplediff options [ ... ]
DESCRIPTION
Establish putative somatic variants using reported differences between germline and somatic samples. Tags each record where the listed sample genotypes differ with . The first sample is assumed to be germline, the second somatic. Each record is tagged with ={germline,somatic,loh} to specify the type of variant given the genotype difference between the two samples.
OPTIONS
options:
-s --strict Require that no observations in the germline support the somatic alternate.
Type: transformation
EXIT VALUES
|
0 |
Success |
|||
|
not 0 |
Failure |
SEE ALSO
vcflib (1)
OTHER
LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.
AUTHORS
Erik Garrison and vcflib contributors.