Man page - vcfremoveaberrantgenotypes(1)

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Package: libvcflib-tools
apt-get install libvcflib-tools

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vcflib-api(1)
vcfannotategenotypes(1)
vcfcat(1)
vcfgeno2alleles(1)
vcfroc(1)
vcfhethomratio(1)
vcfcountalleles(1)
vcfaddinfo(1)
vcfrandomsample(1)
vcfbreakmulti(1)
vcfcheck(1)
vcfsitesummarize(1)
vcfdistance(1)
vcfglbound(1)
pyvcflib(1)
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vcflib(1)
vcfnumalt(1)
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vcfkeepgeno(1)
vcfgeno2haplo(1)
vcfallelicprimitives(1)
vcfindex(1)
vcfecho(1)
vcfwave(1)
vcf2tsv(1)
vcffixup(1)
vcfremap(1)
vcfnullgenofields(1)
vcfoverlay(1)
vcfremoveaberrantgenotypes(1)
vcfflatten(1)
vcfintersect(1)
vcfprimers(1)
vcfgenosamplenames(1)
vcfafpath(1)
vcfinfo2qual(1)
vcfparsealts(1)
vcffilter(1)
vcfuniqalleles(1)
vcfgenotypes(1)
vcfsamplenames(1)
vcfaltcount(1)
vcfcombine(1)
vcfuniq(1)
vcf2dag(1)
vcfgenotypecompare(1)
vcfhetcount(1)
vcfclassify(1)
vcfkeepsamples(1)
vcf2fasta(1)
vcflength(1)
vcfleftalign(1)
vcfcommonsamples(1)
vcfglxgt(1)
vcfentropy(1)
vcfrandom(1)
vcfcreatemulti(1)
vcfnulldotslashdot(1)
vcfgenosummarize(1)
vcfstats(1)
vcfannotate(1)
smoother(1)
vcfstreamsort(1)
vcfevenregions(1)
vcfld(1)
vcfkeepinfo(1)
vcfqual2info(1)
vcfremovesamples(1)
abba-baba(1)
vcfcleancomplex(1)
vcfsamplediff(1)

Documentations in package:

libvcflib-tools

Manual

VCFREMOVEABERRANTGENOTYPES

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
EXIT VALUES
SEE ALSO
OTHER
LICENSE
AUTHORS

NAME

vcfremoveaberrantgenotypes

SYNOPSIS

vcfremoveaberrantgenotypes

DESCRIPTION

strips samples which are homozygous but have observations implying heterozygosity. Remove samples for which the reported genotype (GT) and observation counts disagree (AO, RO).

OPTIONS

Type: transformation

EXIT VALUES

	0		Success
	not 0		Failure

OTHER

LICENSE

AUTHORS

Erik Garrison and vcflib contributors.