Man page - vcfannotate(1)
Packages contains this manual
- vcflib-api(1)
- vcfannotategenotypes(1)
- vcfcat(1)
- vcfgeno2alleles(1)
- vcfroc(1)
- vcfhethomratio(1)
- vcfcountalleles(1)
- vcfaddinfo(1)
- vcfrandomsample(1)
- vcfbreakmulti(1)
- vcfcheck(1)
- vcfsitesummarize(1)
- vcfdistance(1)
- vcfglbound(1)
- pyvcflib(1)
- vcfinfosummarize(1)
- vcflib(1)
- vcfnumalt(1)
- vcfsample2info(1)
- vcfkeepgeno(1)
- vcfgeno2haplo(1)
- vcfallelicprimitives(1)
- vcfindex(1)
- vcfecho(1)
- vcfwave(1)
- vcf2tsv(1)
- vcffixup(1)
- vcfremap(1)
- vcfnullgenofields(1)
- vcfoverlay(1)
- vcfremoveaberrantgenotypes(1)
- vcfflatten(1)
- vcfintersect(1)
- vcfprimers(1)
- vcfgenosamplenames(1)
- vcfafpath(1)
- vcfinfo2qual(1)
- vcfparsealts(1)
- vcffilter(1)
- vcfuniqalleles(1)
- vcfgenotypes(1)
- vcfsamplenames(1)
- vcfaltcount(1)
- vcfcombine(1)
- vcfuniq(1)
- vcf2dag(1)
- vcfgenotypecompare(1)
- vcfhetcount(1)
- vcfclassify(1)
- vcfkeepsamples(1)
- vcf2fasta(1)
- vcflength(1)
- vcfleftalign(1)
- vcfcommonsamples(1)
- vcfglxgt(1)
- vcfentropy(1)
- vcfrandom(1)
- vcfcreatemulti(1)
- vcfnulldotslashdot(1)
- vcfgenosummarize(1)
- vcfstats(1)
- vcfannotate(1)
- smoother(1)
- vcfstreamsort(1)
- vcfevenregions(1)
- vcfld(1)
- vcfkeepinfo(1)
- vcfqual2info(1)
- vcfremovesamples(1)
- abba-baba(1)
- vcfcleancomplex(1)
- vcfsamplediff(1)
Package: libvcflib-tools
apt-get install libvcflib-tools
apt-get install libvcflib-tools
Manuals in package:
Documentations in package:
Manual
VCFANNOTATE
NAMESYNOPSIS
DESCRIPTION
OPTIONS
EXIT VALUES
SEE ALSO
OTHER
LICENSE
AUTHORS
NAME
vcfannotate
SYNOPSIS
vcfannotate options []
DESCRIPTION
Intersect the records in the VCF file with targets provided in a BED file. Intersections are done on the reference sequences in the VCF file. If no VCF filename is specified on the command line (last argument) the VCF read from stdin.
OPTIONS
options:
-b, --bed use annotations provided by this BED file
-k, --key use this INFO field key for the annotations
-d, --default use this INFO field key for records without annotations
Type: transformation
EXIT VALUES
|
0 |
Success |
|||
|
not 0 |
Failure |
SEE ALSO
vcflib (1)
OTHER
LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.
AUTHORS
Erik Garrison and vcflib contributors.