Man page - vcfglbound(1)

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Package: libvcflib-tools
apt-get install libvcflib-tools

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vcflib-api(1)
vcfannotategenotypes(1)
vcfcat(1)
vcfgeno2alleles(1)
vcfroc(1)
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vcfcountalleles(1)
vcfaddinfo(1)
vcfrandomsample(1)
vcfbreakmulti(1)
vcfcheck(1)
vcfsitesummarize(1)
vcfdistance(1)
vcfglbound(1)
pyvcflib(1)
vcfinfosummarize(1)
vcflib(1)
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vcfecho(1)
vcfwave(1)
vcf2tsv(1)
vcffixup(1)
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vcfnullgenofields(1)
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vcfintersect(1)
vcfprimers(1)
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vcfinfo2qual(1)
vcfparsealts(1)
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vcfuniqalleles(1)
vcfgenotypes(1)
vcfsamplenames(1)
vcfaltcount(1)
vcfcombine(1)
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vcf2dag(1)
vcfgenotypecompare(1)
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vcfkeepsamples(1)
vcf2fasta(1)
vcflength(1)
vcfleftalign(1)
vcfcommonsamples(1)
vcfglxgt(1)
vcfentropy(1)
vcfrandom(1)
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vcfnulldotslashdot(1)
vcfgenosummarize(1)
vcfstats(1)
vcfannotate(1)
smoother(1)
vcfstreamsort(1)
vcfevenregions(1)
vcfld(1)
vcfkeepinfo(1)
vcfqual2info(1)
vcfremovesamples(1)
abba-baba(1)
vcfcleancomplex(1)
vcfsamplediff(1)

Documentations in package:

libvcflib-tools

Manual

VCFGLBOUND

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
EXIT VALUES
SEE ALSO
OTHER
LICENSE
AUTHORS

NAME

vcfglbound

SYNOPSIS

vcfglbound options

DESCRIPTION

Adjust GLs so that the maximum GL is 0 by dividing all GLs for each sample by the max.

OPTIONS

Then cap (bound) at N (e.g. -10).options:
    -b, --bound N          Bound GLs to this limit.
    -x, --exclude-broken   If GLs are > 0, remove site.


Type: transformation

EXIT VALUES

	0		Success
	not 0		Failure

OTHER

LICENSE

AUTHORS

Erik Garrison and vcflib contributors.