Man page - vcfrandom(1)
Packages contas this manual
- vcfgenotypecompare(1)
- vcfprimers(1)
- vcffilter(1)
- vcfannotate(1)
- vcfentropy(1)
- vcfsample2info(1)
- vcflib-api(1)
- vcfcreatemulti(1)
- vcfinfo2qual(1)
- vcfleftalign(1)
- vcfgenotypes(1)
- vcfannotategenotypes(1)
- vcfremovesamples(1)
- vcfoverlay(1)
- vcfgenosamplenames(1)
- vcfbreakmulti(1)
- vcfcleancomplex(1)
- vcfcountalleles(1)
- vcfgeno2haplo(1)
- vcfallelicprimitives(1)
- vcfstats(1)
- vcfnullgenofields(1)
- vcfkeepinfo(1)
- abba-baba(1)
- vcfuniqalleles(1)
- vcfuniq(1)
- vcfkeepgeno(1)
- vcfglbound(1)
- vcfcheck(1)
- vcfqual2info(1)
- vcfrandom(1)
- vcfinfosummarize(1)
- vcfnumalt(1)
- vcfld(1)
- vcfhethomratio(1)
- vcfsamplediff(1)
- vcfindex(1)
- vcf2tsv(1)
- vcfremap(1)
- vcfclassify(1)
- smoother(1)
- vcfstreamsort(1)
- vcfremoveaberrantgenotypes(1)
- vcfsamplenames(1)
- vcfevenregions(1)
- vcfcommonsamples(1)
- vcfgenosummarize(1)
- vcfecho(1)
- vcflength(1)
- pyvcflib(1)
- vcfsitesummarize(1)
- vcfparsealts(1)
- vcfnulldotslashdot(1)
- vcfcombine(1)
- vcflib(1)
- vcf2dag(1)
- vcf2fasta(1)
- vcfglxgt(1)
- vcffixup(1)
- vcfwave(1)
- vcfcat(1)
- vcfintersect(1)
- vcfflatten(1)
- vcfaltcount(1)
- vcfkeepsamples(1)
- vcfdistance(1)
- vcfaddinfo(1)
- vcfgeno2alleles(1)
- vcfrandomsample(1)
- vcfhetcount(1)
- vcfafpath(1)
- vcfroc(1)
Package: libvcflib-tools
apt-get install libvcflib-tools
apt-get install libvcflib-tools
Manuals in package:
Documentations in package:
Manual
| VCFRANDOM(1) | vcfrandom (VCF statistics) | VCFRANDOM(1) |
NAME
vcfrandom
SYNOPSIS
vcfrandom
DESCRIPTION
Generate a random VCF file
EXAMPLES
-
Example:
**vcfrandom** ##fileformat=VCFv4.0 ##source=**vcfrandom** ##reference=/d2/data/references/build_37/human_reference_v37.fa ##phasing=none ##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data"> ##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus"> ##INFO=<ID=AC,Number=1,Type=Integer,Description="Total number of alternate alleles in called genotypes"> ##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes"> ##INFO=<ID=AF,Number=1,Type=Float,Description="Estimated allele frequency in the range (0,1]"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth"> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT bill one 1 . G G,A 100 . DP=83 GT:DP 0/1:1 one 2 . G G,A 100 . DP=3 GT:DP 0/1:49 one 3 . G C,T 100 . DP=5 GT:DP 0/1:12 one 4 . C G,T 100 . DP=51 GT:DP 0/1:60 one 5 . A T,A 100 . DP=31 GT:DP 0/1:89 one 6 . T T,A 100 . DP=56 GT:DP 0/1:60 one 7 . T A,C 100 . DP=78 GT:DP 0/1:75 one 8 . T G,A 100 . DP=73 GT:DP 0/1:78 one 9 . C C,G 100 . DP=42 GT:DP 0/1:67 Type: statistics
EXIT VALUES
- 0
- Success
- not 0
- Failure
SEE ALSO
vcflib(1)
OTHER
LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.
AUTHORS
Erik Garrison and vcflib contributors.
| vcfrandom (vcflib) |