Man page - vcfannotategenotypes(1)

Packages contains this manual

Package: libvcflib-tools
apt-get install libvcflib-tools

Manuals in package:

vcflib-api(1)
vcfannotategenotypes(1)
vcfcat(1)
vcfgeno2alleles(1)
vcfroc(1)
vcfhethomratio(1)
vcfcountalleles(1)
vcfaddinfo(1)
vcfrandomsample(1)
vcfbreakmulti(1)
vcfcheck(1)
vcfsitesummarize(1)
vcfdistance(1)
vcfglbound(1)
pyvcflib(1)
vcfinfosummarize(1)
vcflib(1)
vcfnumalt(1)
vcfsample2info(1)
vcfkeepgeno(1)
vcfgeno2haplo(1)
vcfallelicprimitives(1)
vcfindex(1)
vcfecho(1)
vcfwave(1)
vcf2tsv(1)
vcffixup(1)
vcfremap(1)
vcfnullgenofields(1)
vcfoverlay(1)
vcfremoveaberrantgenotypes(1)
vcfflatten(1)
vcfintersect(1)
vcfprimers(1)
vcfgenosamplenames(1)
vcfafpath(1)
vcfinfo2qual(1)
vcfparsealts(1)
vcffilter(1)
vcfuniqalleles(1)
vcfgenotypes(1)
vcfsamplenames(1)
vcfaltcount(1)
vcfcombine(1)
vcfuniq(1)
vcf2dag(1)
vcfgenotypecompare(1)
vcfhetcount(1)
vcfclassify(1)
vcfkeepsamples(1)
vcf2fasta(1)
vcflength(1)
vcfleftalign(1)
vcfcommonsamples(1)
vcfglxgt(1)
vcfentropy(1)
vcfrandom(1)
vcfcreatemulti(1)
vcfnulldotslashdot(1)
vcfgenosummarize(1)
vcfstats(1)
vcfannotate(1)
smoother(1)
vcfstreamsort(1)
vcfevenregions(1)
vcfld(1)
vcfkeepinfo(1)
vcfqual2info(1)
vcfremovesamples(1)
abba-baba(1)
vcfcleancomplex(1)
vcfsamplediff(1)

Documentations in package:

libvcflib-tools

Manual

VCFANNOTATEGENOTYPES

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
EXIT VALUES
SEE ALSO
OTHER
LICENSE
AUTHORS

NAME

vcfannotategenotypes

SYNOPSIS

vcfannotategenotypes

DESCRIPTION

Examine genotype correspondence. Annotate genotypes in the first file with genotypes in the second adding the genotype as another flag to each sample filed in the first file. annotation-tag is the name of the sample flag which is added to store the annotation. also adds a ‘has_variant’ flag for sites where the second file has a variant.

OPTIONS

Type: transformation

EXIT VALUES

	0		Success
	not 0		Failure

OTHER

LICENSE

AUTHORS

Erik Garrison and vcflib contributors.