Man page - segmentihs(1)
Packages contains this manual
- vcflib-api(1)
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Package: libvcflib-tools
apt-get install libvcflib-tools
apt-get install libvcflib-tools
Manuals in package:
Documentations in package:
Manual
SEGMENTIHS
NAMESYNOPSIS
DESCRIPTION
OPTIONS
EXIT VALUES
SEE ALSO
OTHER
LICENSE
AUTHORS
NAME
segmentIhs
SYNOPSIS
segmentFst -s 2 -f iHS.normalized.output.txt
DESCRIPTION
Creates genomic segments (bed file) for regions with high wcFst
OPTIONS
Output : 8 columns :
1. Seqid
2. Start (zero based)
3. End (zero based)
4. Average iHS
5. Average high Fst (iHS > -s)
6. N iHS values in segment
7. N high iHS values in segment
8. Segment length
required: -f -- Output from normalizeIHS
optional: -s -- High absolute iHS cutoff [2]
Type: statistics
EXIT VALUES
|
0 |
Success |
|||
|
not 0 |
Failure |
SEE ALSO
vcflib (1)
OTHER
LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.
AUTHORS
Erik Garrison and vcflib contributors.