Man page - pxvcf2fa(1)
Packages contains this manual
- pxs2fa(1)
- pxcomp(1)
- pxtcomb(1)
- pxsw(1)
- pxmono(1)
- pxlssq(1)
- pxssort(1)
- pxrmt(1)
- pxaa2cdn(1)
- pxpoly(1)
- pxcontrates(1)
- pxcat(1)
- pxs2phy(1)
- pxstrec(1)
- pxtgen(1)
- pxtcol(1)
- pxrecode(1)
- pxupgma(1)
- pxmrcaname(1)
- pxlstr(1)
- pxrevcomp(1)
- pxrr(1)
- pxtrt(1)
- pxrlt(1)
- pxbdfit(1)
- pxnw(1)
- pxbdsim(1)
- pxrmk(1)
- pxclsq(1)
- pxt2new(1)
- pxtlate(1)
- pxvcf2fa(1)
- pxrms(1)
- pxfqfilt(1)
- pxt2nex(1)
- pxcltr(1)
- pxlog(1)
- pxmrca(1)
- pxseqgen(1)
- pxbp(1)
- pxnj(1)
- pxsstat(1)
- pxtscale(1)
- pxconsq(1)
- pxs2nex(1)
- pxrls(1)
- pxmrcacut(1)
- pxcolt(1)
- pxboot(1)
apt-get install phyx
Manual
PXVCF2FA
NAMESYNOPSIS
DESCRIPTION
OPTIONS
CITATION
AUTHOR
REPORTING BUGS
COPYRIGHT
NAME
pxvcf2fa - convert vcf file to fasta
SYNOPSIS
pxvcf2fa [ OPTIONS ]...
DESCRIPTION
Convert vcf file to fasta. Currently only handles haploid data; phased data will come soon. Data can be read from a file or STDIN.
OPTIONS
-s , --seqf = FILE
input vcf file, STDIN otherwise
-u , --uppercase
export characters in uppercase
-o , --outf = FILE
output fasta sequence file, STOUT otherwise
-h , --help
display this help and exit
-V , --version
display version and exit
-C , --citation
display phyx citation and exit
CITATION
Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.
AUTHOR
Written by Joseph W. Brown
REPORTING BUGS
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>
COPYRIGHT
Copyright © 2013-2024 FePhyFoFum License GPLv3