Man page - pxboot(1)

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Package: phyx
apt-get install phyx

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Documentations in package:

phyx

Manual

PXBOOT

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
CITATION
AUTHOR
REPORTING BUGS
COPYRIGHT

NAME

pxboot - sequence alignment bootstrap or jackknife resampling

SYNOPSIS

pxboot [ OPTIONS ]...

DESCRIPTION

Sequence alignment bootstrap or jackknife resampling. This will take fasta, fastq, phylip, and nexus formats from a file or STDIN. Results are written in fasta format.

OPTIONS

-s , --seqf = FILE

input sequence file, STDIN otherwise

-p , --partf = FILE

file listing empirical partitions: NAME = START-STOP[\INTERVAL]

-f , --frac = DOUBLE

jackknife percentage, default bootstrap (i.e. -f 1.0)

-x , --seed = INT

random number seed, clock otherwise

-o , --outf = FILE

output sequence file, STOUT otherwise

-h , --help

display this help and exit

-V , --version

display version and exit

-C , --citation

display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Joseph W. Brown

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>