Man page - pxcltr(1)
Packages contas this manual
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- pxtcol(1)
- pxsstat(1)
- pxclsq(1)
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- pxmrcaname(1)
- pxnj(1)
- pxcltr(1)
- pxs2phy(1)
- pxcontrates(1)
- pxtlate(1)
- pxt2nex(1)
- pxbdsim(1)
- pxcomp(1)
- pxbp(1)
- pxpoly(1)
- pxstrec(1)
- pxnw(1)
- pxcat(1)
- pxsw(1)
- pxrmk(1)
- pxseqgen(1)
- pxtgen(1)
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apt-get install phyx
Manual
| PXCLTR(1) | User Commands | PXCLTR(1) |
NAME
pxcltr - general tree cleaner
SYNOPSIS
pxcltr [OPTIONS]...
DESCRIPTION
General tree cleaner. Removes annotations (node labels), 'knuckles' (2-degree nodes), and root edges to generate a 'vanilla' newick representation. By default removes all properties. Alternatively choose 1 property. This will take a newick- or nexus-formatted tree from a file or STDIN. Output is written in newick format.
OPTIONS
- -t, --treef=FILE
- input treefile, STDIN otherwise
- -r, --root
- remove root edge (if present)
- -l, --labels
- remove internal node labels
- -k, --knuckles
- remove 2-degree internal nodes
- -o, --outf=FILE
- output file, STOUT otherwise
- -h, --help
- display this help and exit
- -V, --version
- display version and exit
- -C, --citation
- display phyx citation and exit
CITATION
Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.
AUTHOR
Written by Joseph W. Brown
REPORTING BUGS
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>
COPYRIGHT
Copyright © 2017-2024 FePhyFoFum License GPLv3
| June 2024 | pxcltr 1.3.1 |