Man page - pxlstr(1)

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Package: phyx
apt-get install phyx

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phyx

Manual

PXLSTR

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
CITATION
AUTHOR
REPORTING BUGS
COPYRIGHT

NAME

pxlstr - print tree summary

SYNOPSIS

pxlstr [ OPTIONS ]...

DESCRIPTION

Print tree summary. By default returns all properties. Alternatively choose 1 property. This will take a newick- or nexus-formatted tree from a file or STDIN.

OPTIONS

-t , --treef = FILE

input tree file, STDIN otherwise

-r , --rooted

return whether the tree is rooted

-a , --age

return the height of root (must be rooted and ultrametric)

-n , --ntips

return the number of terminals

-u , --ultrametric

return whether tree is ultrametric

-b , --binary

return whether tree is binary

-l , --length

return the length of the tree

-i , --tiplabels

return all tip labels (one per line)

-v , --rtvar

return root-to-tip variance

-o , --outf = FILE

output tree stats file, STOUT otherwise

-h , --help

display this help and exit

-V , --version

display version and exit

-C , --citation

display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Joseph W. Brown

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>