Man page - pxmono(1)

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Package: phyx
apt-get install phyx

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phyx

Manual

PXMONO

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
CITATION
AUTHOR
REPORTING BUGS
COPYRIGHT

NAME

pxmono - monophyly checker

SYNOPSIS

pxmono [ OPTIONS ]...

DESCRIPTION

Monophyly checker. This will take a newick- or nexus-formatted tree from a file or STDIN.

OPTIONS

-t , --treef = FILE

input tree file, STDIN otherwise

-n , --names = CSL

names separated by commas (NO SPACES!)

-f , --namesf = FILE

names in a file (each on a line)

-c , --comp

take the complement (i.e. check monophyly of taxa not in list)

-i , --ignore

ignore missing (default: exit if names are not in the tree)

-o , --outf = FILE

output tree file, STOUT otherwise

-h , --help

display this help and exit

-V , --version

display version and exit

-C , --citation

display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Joseph W. Brown

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>