Man page - pxssort(1)

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Manual

PXSSORT

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
CITATION
AUTHOR
REPORTING BUGS
COPYRIGHT

NAME

pxssort - sort sequences by id or length

SYNOPSIS

pxssort [ OPTIONS ]...

DESCRIPTION

Sort sequences by id or length. This will take fasta, phylip, and nexus formats from a file or STDIN.

OPTIONS

-s , --seqf = FILE

input sequence file, STDIN otherwise

-b , --sortby

what to sort by: 1:id (default) 2:id rev 3:length (<) 4:length (>)

-o , --outf = FILE

output sequence file, STOUT otherwise

-h , --help

display this help and exit

-V , --version

display version and exit

-C , --citation

display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Stephen A. Smith (blackrim), Joseph W. Brown

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>

COPYRIGHT

Copyright © 2017-2024 FePhyFoFum License GPLv3