Man page - pxcolt(1)

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Package: phyx
apt-get install phyx

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phyx

Manual

PXCOLT

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
CITATION
AUTHOR
REPORTING BUGS
COPYRIGHT

NAME

pxcolt - collapse edges with support below some threshold

SYNOPSIS

pxcolt [ OPTIONS ]...

DESCRIPTION

Collapse edges with support below some threshold. If annotated Nexus, may require passing in the support identifier ( -s ). This will take a newick- or nexus-formatted tree from a file or STDIN. Output is written in newick format.

OPTIONS

-t , --treef = FILE

input tree file, STDIN otherwise

-l , --limit = DOUBLE

minimum support threshold as proportion (default = 0.5)

-o , --outf = FILE

output file, STOUT otherwise

-h , --help

display this help and exit

-V , --version

display version and exit

-C , --citation

display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Joseph W. Brown

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>