Man page - pxtcol(1)

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Package: phyx
apt-get install phyx

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phyx

Manual

PXTCOL

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
CITATION
AUTHOR
REPORTING BUGS
COPYRIGHT

NAME

pxtcol - add information to color edges of a tree

SYNOPSIS

pxtcol [ OPTIONS ]...

DESCRIPTION

Add information to a tree so that you can color the edges. This will take nexus and newick inputs from a file or STDIN. Results are written in nexus format so that it can be read by figtree.

OPTIONS

-t , --treef = FILE

input tree file, STDIN otherwise

-m , --mrcaf = FILE

file with mrcas and annotations, tab separated

-d , --nodeidf = FILE

file with nodeids (labels) and annotations, tab separated

-o , --outf = FILE

output file, STOUT otherwise

-h , --help

display this help and exit

-V , --version

display version and exit

-C , --citation

display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Stephen A. Smith (blackrim)

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>