Man page - pxtrt(1)

Packages contains this manual

Package: phyx
apt-get install phyx

Manuals in package:

Documentations in package:

phyx

Manual

PXTRT

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
CITATION
AUTHOR
REPORTING BUGS
COPYRIGHT

NAME

pxtrt - trace big tree from taxon list and produce newick

SYNOPSIS

pxtrt [ OPTIONS ]...

DESCRIPTION

This will trace a big tree given a taxon list and produce newick. Data can be read from a file or STDIN.

OPTIONS

-t , --treef = FILE

input tree file, STDIN otherwise

-n , --names = CSL

names sep by commas (NO SPACES!)

-f , --namesf = FILE

names in a file (each on a line)

-c , --comp

take the complement (i.e. remove any taxa not in list)

-s , --silent

suppress warnings of missing tips

-o , --outf = FILE

output tree file, STOUT otherwise

-h , --help

display this help and exit

-V , --version

display version and exit

-C , --citation

display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Stephen A. Smith (blackrim), Joseph W. Brown

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>