Man page - pxrms(1)

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Package: phyx
apt-get install phyx

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phyx

Manual

PXRMS

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
CITATION
AUTHOR
REPORTING BUGS
COPYRIGHT

NAME

pxrms - remove sequences by label

SYNOPSIS

pxrms [ OPTIONS ]...

DESCRIPTION

Remove sequences by label. This will take fasta, fastq, phylip, and nexus formats from a file or STDIN. Results are written in fasta format.

OPTIONS

-s , --seqf = FILE

input nucleotide sequence file, STDIN otherwise

-n , --names = CSL

names sep by commas (NO SPACES!)

-f , --namesf = FILE

names in a file (each on a line)

-r , --regex = STRING

match tip labels by a regular expression

-c , --comp

take the complement (i.e. remove any taxa not in list)

-o , --outf = FILE

output sequence file, STOUT otherwise

-h , --help

display this help and exit

-V , --version

display version and exit

-C , --citation

display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Joseph W. Brown, Joseph F. Walker, Stephen A. Smith (blackrim)

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>