Man page - pxrevcomp(1)

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Package: phyx
apt-get install phyx

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phyx

Manual

PXREVCOMP

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
CITATION
AUTHOR
REPORTING BUGS
COPYRIGHT

NAME

pxrevcomp - reverse complement sequences

SYNOPSIS

pxrevcomp [ OPTIONS ]... [ FILE ]...

DESCRIPTION

Reverse complement sequences. This will take fasta, fastq, phylip, and nexus formats from a file or STDIN. Results are written in fasta format.

OPTIONS

-s , --seqf = FILE

input sequence file, STDIN otherwise

-i , --ids = IDS

a comma sep list of ids to flip (NO SPACES!)

-g , --guess

EXPERIMENTAL: guess whether there are seqs that need to be rev comp. uses edlib library on first seq

-p , --pguess

EXPERIMENTAL: progressively guess

-m , --sguess

EXPERIMENTAL: sampled guess

-o , --outf = FILE

output sequence file, STOUT otherwise

-h , --help

display this help and exit

-V , --version

display version and exit

-C , --citation

display phyx citation and exit

CITATION

Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.

AUTHOR

Written by Stephen A. Smith (blackrim)

REPORTING BUGS

Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>