Man page - permutegpat++(1)
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Package: libvcflib-tools
apt-get install libvcflib-tools
apt-get install libvcflib-tools
Manuals in package:
Documentations in package:
Manual
PERMUTEGPAT++
NAMESYNOPSIS
DESCRIPTION
OPTIONS
EXIT VALUES
SEE ALSO
OTHER
LICENSE
AUTHORS
NAME
permuteGPAT++
SYNOPSIS
permuteGPAT++ -f gpat.txt -n 5 -s 1
DESCRIPTION
permuteGPAT++ is a method for adding empirical p-values to a GPAT++ score.
OPTIONS
Currently **permuteGPAT++** only supports wcFst, but will be extended.
OUTPUT: **permuteGPAT++** will append three additional columns:
1. The number of successes
2. The number of trials
3. The empirical p-value
file: f -- argument: the input file
number: n -- argument: the number of permutations to run for each value [1000]
success: s -- argument: stop permutations after 's' successes [1]
Type: phenotype
EXIT VALUES
|
0 |
Success |
|||
|
not 0 |
Failure |
SEE ALSO
vcflib (1)
OTHER
LICENSE
Copyright 2011-2024 (C) Erik Garrison and vcflib contributors. MIT licensed. Copyright 2020-2024 (C) Pjotr Prins.
AUTHORS
Erik Garrison and vcflib contributors.