Man page - rchive(1)
Packages contains this manual
- join-into-groups-of(1)
- gbf2ref(1)
- quote-grouped-elements(1)
- disambiguate-nucleotides(1)
- gff-sort(1)
- pma2pme(1)
- pm-collect(1)
- pm-setup(1)
- systematic-mutations(1)
- sort-uniq-count-rank(1)
- archive-pids(1)
- efetch(1)
- pma2apa(1)
- gbf2fsa(1)
- intersect-uid-lists(1)
- skip-if-file-exists(1)
- archive-taxonomy(1)
- jsonl2xml(1)
- efetch.ncbi(1)
- difference-uid-lists(1)
- download-ncbi-data(1)
- snp2tbl(1)
- einfo(1)
- gbf2facds(1)
- tbl2prod(1)
- cit2pmid(1)
- run-ncbi-converter(1)
- args2slice(1)
- xy-plot(1)
- xml2tbl(1)
- archive-nihocc(1)
- fsa2xml(1)
- download-pubmed(1)
- just-top-hits(1)
- sort-uniq-count(1)
- sort-by-length(1)
- json2xml(1)
- filter-stop-words(1)
- archive-nmcds(1)
- print-missing-subranges(1)
- word-at-a-time(1)
- between-two-genes(1)
- esearch(1)
- xfilter(1)
- einfo.ncbi(1)
- efilter(1)
- gbf2info(1)
- pmc2bioc(1)
- download-ncbi-software(1)
- filter-columns(1)
- pm-refresh(1)
- edict(1)
- split-at-intron(1)
- amino-acid-composition(1)
- expand-current(1)
- gbf2xml(1)
- gff2xml(1)
- find-in-gene(1)
- archive-pmc(1)
- download-sequence(1)
- snp2hgvs(1)
- pmc2info(1)
- download-pmc(1)
- bsmp2info(1)
- pm-clean(1)
- esample(1)
- gene2range(1)
- print-columns(1)
- scn2xml(1)
- xfetch(1)
- archive-pubmed(1)
- ds2pme(1)
- tbl2xml(1)
- xml2fsa(1)
- xlink(1)
- download-flatfile(1)
- reorder-columns(1)
- blst2tkns(1)
- exclude-uid-lists(1)
- sort-table(1)
- fuse-segments(1)
- transmute(1)
- combine-uid-lists(1)
- pair-at-a-time(1)
- spdi2tbl(1)
- ecollect(1)
- accn-at-a-time(1)
- custom-index(1)
- gbf2tbl(1)
- align-columns(1)
- asn2ref(1)
- pm-prepare(1)
- elink(1)
- archive-nlmnlp(1)
- xtract(1)
- gm2segs(1)
- epost(1)
- hgvs2spdi(1)
- esummary(1)
- rchive(1)
- refseq-nm-cds(1)
- ini2xml(1)
- xinfo(1)
- xsearch(1)
- csv2xml(1)
- uniq-table(1)
- yaml2xml(1)
- ref2pmid(1)
- filter-record(1)
- fuse-ranges(1)
- nquire(1)
- filter-genbank(1)
apt-get install ncbi-entrez-direct
Manual
RCHIVE
NAMESYNOPSIS
DESCRIPTION
OPTIONS
Processing Flags
Data Source
Local Record Cache
Local Record Index
Documentation
SEE ALSO
NAME
rchive - work with a local archive of Entrez document summaries
SYNOPSIS
rchive [ -help ] [ -strict ] [ -mixed ] [ -input filename ] [ -archive archive indices increment ] [ -delete archive indices increment ] [ -index element ] [ -fetch directory ] [ -stream directory ] [ -flag strict | mixed | none ] [ -gzip ] [ -hash ] [ -trie [ type ]] [ -padz ] [ -e2index [ extras ]] [ -e2invert archive ] [ -join ] [ -fuse ] [ -merge directory field ] [ -promote directory field ] [ -path directory ] [ -query query ] [ -exact query ] [ -title query ] [ -count query ] [ -counts query ] [ -version ]
DESCRIPTION
rchive creates, updates, or extracts records from a local archive of Entrez document summaries.
OPTIONS
Processing Flags
-strict
Remove HTML and MathML tags.
|
-mixed |
Allow mixed content XML. |
Data Source
-input filename
Read XML from file instead of standard input.
Local Record Cache
-archive archive indices increment
Base path for saving individual XML files, plus paths for first- and second-level inverted index caches.
-delete archive indices increment
Same paths as -archive , for deleting inverted caches.
-index element
Use [ parent / element @ attribute ˆ version ] for identifier.
-fetch directory
Base path for retrieving XML files.
-stream directory
Path for retrieving compressed XML files (left compressed).
-flag strict | mixed | none
Alternative syntax for specifying the corresponding options.
|
-gzip |
Use compression for local XML files. |
|||
|
-hash |
Print UIDs and checksum values to standard output. |
-trie [ type ]
Print archive (default), indices , increment , or posting [ s ] file path.
|
-padz |
Pad PMIDs with leading zeros to eight characters. |
Local Record Index
-e2index [ extras ]
Create Entrez index XML. extras ( true or false ; false by default) indicates whether to index extra fields.
-e2invert archive
Combined -e2index and -invert in archive.
|
-join |
Collect subsets of inverted index files. |
|||
|
-fuse |
Combine subsets of inverted index files. |
-merge directory field
Combine inverted indices, dividing by term prefix.
-promote directory field
Create term lists and posting files.
-path directory
Path to postings directory.
-query query
Search on words or phrases in Boolean formulas.
-exact query
Strict search for article round-tripping.
-title query
Exact search limited to indexed title field.
-count query
Print terms and counts, merging wildcards.
-counts query
Expand wildcards; print individual term counts.
Documentation
|
-help |
Print usage information and some example argument combinations. |
-version
Print version number.
SEE ALSO
archive-nihocc (1), archive-nlmnlp (1), archive-nmcds (1), archive-pids (1), archive-pmc (1), archive-pubmed (1), archive-taxonomy (1), custom-index (1), download-flatfile (1), download-pubmed (1), pm-clean (1), pm-collect (1), pm-prepare (1), pm-refresh (1), pm-setup (1), xfetch (1), xfilter (1), xinfo (1), xlink (1), xsearch (1), xtract (1).