Man page - rchive(1)
Packages contas this manual
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- pmc2bioc(1)
- hgvs2spdi(1)
- archive-nihocc(1)
- sort-by-length(1)
- print-missing-subranges(1)
- asn2ref(1)
- gene2range(1)
- xfetch(1)
- ini2xml(1)
- filter-genbank(1)
- sort-uniq-count-rank(1)
- archive-pmc(1)
- pair-at-a-time(1)
- xml2tbl(1)
- fuse-ranges(1)
- download-ncbi-data(1)
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- epost(1)
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- find-in-gene(1)
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- gbf2info(1)
- filter-stop-words(1)
- exclude-uid-lists(1)
- archive-pubmed(1)
- print-columns(1)
- transmute(1)
- fsa2xml(1)
- quote-grouped-elements(1)
- esample(1)
- sort-uniq-count(1)
- download-pmc(1)
- pm-setup(1)
- archive-taxonomy(1)
- csv2xml(1)
- expand-current(1)
- esearch(1)
- download-sequence(1)
- archive-nmcds(1)
- reorder-columns(1)
- cit2pmid(1)
- fuse-segments(1)
- archive-pids(1)
- xml2fsa(1)
- scn2xml(1)
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- elink(1)
- xy-plot(1)
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- yaml2xml(1)
- gbf2ref(1)
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- xlink(1)
- efetch.ncbi(1)
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- gbf2facds(1)
- json2xml(1)
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- args2slice(1)
- efetch(1)
- filter-columns(1)
- gbf2xml(1)
- download-pubmed(1)
- archive-nlmnlp(1)
- xtract(1)
- einfo.ncbi(1)
- intersect-uid-lists(1)
- custom-index(1)
- xfilter(1)
- ds2pme(1)
- amino-acid-composition(1)
- pm-clean(1)
- rchive(1)
- ref2pmid(1)
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- join-into-groups-of(1)
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- word-at-a-time(1)
- uniq-table(1)
- download-ncbi-software(1)
- tbl2xml(1)
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- pma2apa(1)
- download-flatfile(1)
apt-get install ncbi-entrez-direct
Manual
| RCHIVE(1) | NCBI Entrez Direct User's Manual | RCHIVE(1) |
NAME
rchive - work with a local archive of Entrez document summaries
SYNOPSIS
rchive [-help] [-strict] [-mixed] [-input filename] [-archive archive indices increment] [-delete archive indices increment] [-index element] [-fetch directory] [-stream directory] [-flag strict|mixed|none] [-gzip] [-hash] [-trie [type]] [-padz] [-e2index [extras]] [-e2invert archive] [-join] [-fuse] [-merge directory field] [-promote directory field] [-path directory] [-query query] [-exact query] [-title query] [-count query] [-counts query] [-version]
DESCRIPTION
rchive creates, updates, or extracts records from a local archive of Entrez document summaries.
OPTIONS
Processing Flags
Data Source
- -input filename
- Read XML from file instead of standard input.
Local Record Cache
- -archive archive indices increment
- Base path for saving individual XML files, plus paths for first- and second-level inverted index caches.
- -delete archive indices increment
- Same paths as -archive, for deleting inverted caches.
- -index element
- Use [parent/element@attribute^version] for identifier.
- -fetch directory
- Base path for retrieving XML files.
- -stream directory
- Path for retrieving compressed XML files (left compressed).
- -flag strict|mixed|none
- Alternative syntax for specifying the corresponding options.
- -gzip
- Use compression for local XML files.
- -hash
- Print UIDs and checksum values to standard output.
- -trie [type]
- Print archive (default), indices, increment, or posting[s] file path.
- -padz
- Pad PMIDs with leading zeros to eight characters.
Local Record Index
- -e2index [extras]
- Create Entrez index XML. extras (true or false; false by default) indicates whether to index extra fields.
- -e2invert archive
- Combined -e2index and -invert in archive.
- -join
- Collect subsets of inverted index files.
- -fuse
- Combine subsets of inverted index files.
- -merge directory field
- Combine inverted indices, dividing by term prefix.
- -promote directory field
- Create term lists and posting files.
- -path directory
- Path to postings directory.
- -query query
- Search on words or phrases in Boolean formulas.
- -exact query
- Strict search for article round-tripping.
- -title query
- Exact search limited to indexed title field.
- -count query
- Print terms and counts, merging wildcards.
- -counts query
- Expand wildcards; print individual term counts.
Documentation
SEE ALSO
archive-nihocc(1), archive-nlmnlp(1), archive-nmcds(1), archive-pids(1), archive-pmc(1), archive-pubmed(1), archive-taxonomy(1), custom-index(1), download-flatfile(1), download-pubmed(1), pm-clean(1), pm-collect(1), pm-prepare(1), pm-refresh(1), pm-setup(1), xfetch(1), xfilter(1), xinfo(1), xlink(1), xsearch(1), xtract(1).
| 2025-05-26 | NCBI |