Man page - gbf2facds(1)
Packages contains this manual
- join-into-groups-of(1)
- gbf2ref(1)
- quote-grouped-elements(1)
- disambiguate-nucleotides(1)
- gff-sort(1)
- pma2pme(1)
- pm-collect(1)
- pm-setup(1)
- systematic-mutations(1)
- sort-uniq-count-rank(1)
- archive-pids(1)
- efetch(1)
- pma2apa(1)
- gbf2fsa(1)
- intersect-uid-lists(1)
- skip-if-file-exists(1)
- archive-taxonomy(1)
- jsonl2xml(1)
- efetch.ncbi(1)
- difference-uid-lists(1)
- download-ncbi-data(1)
- snp2tbl(1)
- einfo(1)
- gbf2facds(1)
- tbl2prod(1)
- cit2pmid(1)
- run-ncbi-converter(1)
- args2slice(1)
- xy-plot(1)
- xml2tbl(1)
- archive-nihocc(1)
- fsa2xml(1)
- download-pubmed(1)
- just-top-hits(1)
- sort-uniq-count(1)
- sort-by-length(1)
- json2xml(1)
- filter-stop-words(1)
- archive-nmcds(1)
- print-missing-subranges(1)
- word-at-a-time(1)
- between-two-genes(1)
- esearch(1)
- xfilter(1)
- einfo.ncbi(1)
- efilter(1)
- gbf2info(1)
- pmc2bioc(1)
- download-ncbi-software(1)
- filter-columns(1)
- pm-refresh(1)
- edict(1)
- split-at-intron(1)
- amino-acid-composition(1)
- expand-current(1)
- gbf2xml(1)
- gff2xml(1)
- find-in-gene(1)
- archive-pmc(1)
- download-sequence(1)
- snp2hgvs(1)
- pmc2info(1)
- download-pmc(1)
- bsmp2info(1)
- pm-clean(1)
- esample(1)
- gene2range(1)
- print-columns(1)
- scn2xml(1)
- xfetch(1)
- archive-pubmed(1)
- ds2pme(1)
- tbl2xml(1)
- xml2fsa(1)
- xlink(1)
- download-flatfile(1)
- reorder-columns(1)
- blst2tkns(1)
- exclude-uid-lists(1)
- sort-table(1)
- fuse-segments(1)
- transmute(1)
- combine-uid-lists(1)
- pair-at-a-time(1)
- spdi2tbl(1)
- ecollect(1)
- accn-at-a-time(1)
- custom-index(1)
- gbf2tbl(1)
- align-columns(1)
- asn2ref(1)
- pm-prepare(1)
- elink(1)
- archive-nlmnlp(1)
- xtract(1)
- gm2segs(1)
- epost(1)
- hgvs2spdi(1)
- esummary(1)
- rchive(1)
- refseq-nm-cds(1)
- ini2xml(1)
- xinfo(1)
- xsearch(1)
- csv2xml(1)
- uniq-table(1)
- yaml2xml(1)
- ref2pmid(1)
- filter-record(1)
- fuse-ranges(1)
- nquire(1)
- filter-genbank(1)
apt-get install ncbi-entrez-direct
Manual
GBF2FACDS
NAMESYNOPSIS
DESCRIPTION
OPTIONS
SEE ALSO
NAME
gbf2facds - convert NCBI GenBank flatfile coding sequences to FASTA
SYNOPSIS
gbf2facds [[ - ] nuc |[ - ] NUC |[ - ] na |[ - ] NA |[ - ] prt |[ - ] PRT |[ - ] aa |[ - ] AA ]
DESCRIPTION
gbf2facds reads an NCBI GenBank flatfile from standard input and writes FASTA corresponding to its (optionally translated) coding regions to standard output.
OPTIONS
[ - ] nuc |[ - ] NUC |[ - ] na |[ - ] NA
Print transcribed nucleotides (default).
[ - ] prt |[ - ] PRT |[ - ] aa |[ - ] AA
Print translated amino acids.
SEE ALSO
csv2xml (1), efetch (1), gbf2fsa (1), gbf2info (1), gbf2tbl (1), xtract (1).