Man page - ini2xml(1)
Packages contains this manual
- join-into-groups-of(1)
- gbf2ref(1)
- quote-grouped-elements(1)
- disambiguate-nucleotides(1)
- gff-sort(1)
- pma2pme(1)
- pm-collect(1)
- pm-setup(1)
- systematic-mutations(1)
- sort-uniq-count-rank(1)
- archive-pids(1)
- efetch(1)
- pma2apa(1)
- gbf2fsa(1)
- intersect-uid-lists(1)
- skip-if-file-exists(1)
- archive-taxonomy(1)
- jsonl2xml(1)
- efetch.ncbi(1)
- difference-uid-lists(1)
- download-ncbi-data(1)
- snp2tbl(1)
- einfo(1)
- gbf2facds(1)
- tbl2prod(1)
- cit2pmid(1)
- run-ncbi-converter(1)
- args2slice(1)
- xy-plot(1)
- xml2tbl(1)
- archive-nihocc(1)
- fsa2xml(1)
- download-pubmed(1)
- just-top-hits(1)
- sort-uniq-count(1)
- sort-by-length(1)
- json2xml(1)
- filter-stop-words(1)
- archive-nmcds(1)
- print-missing-subranges(1)
- word-at-a-time(1)
- between-two-genes(1)
- esearch(1)
- xfilter(1)
- einfo.ncbi(1)
- efilter(1)
- gbf2info(1)
- pmc2bioc(1)
- download-ncbi-software(1)
- filter-columns(1)
- pm-refresh(1)
- edict(1)
- split-at-intron(1)
- amino-acid-composition(1)
- expand-current(1)
- gbf2xml(1)
- gff2xml(1)
- find-in-gene(1)
- archive-pmc(1)
- download-sequence(1)
- snp2hgvs(1)
- pmc2info(1)
- download-pmc(1)
- bsmp2info(1)
- pm-clean(1)
- esample(1)
- gene2range(1)
- print-columns(1)
- scn2xml(1)
- xfetch(1)
- archive-pubmed(1)
- ds2pme(1)
- tbl2xml(1)
- xml2fsa(1)
- xlink(1)
- download-flatfile(1)
- reorder-columns(1)
- blst2tkns(1)
- exclude-uid-lists(1)
- sort-table(1)
- fuse-segments(1)
- transmute(1)
- combine-uid-lists(1)
- pair-at-a-time(1)
- spdi2tbl(1)
- ecollect(1)
- accn-at-a-time(1)
- custom-index(1)
- gbf2tbl(1)
- align-columns(1)
- asn2ref(1)
- pm-prepare(1)
- elink(1)
- archive-nlmnlp(1)
- xtract(1)
- gm2segs(1)
- epost(1)
- hgvs2spdi(1)
- esummary(1)
- rchive(1)
- refseq-nm-cds(1)
- ini2xml(1)
- xinfo(1)
- xsearch(1)
- csv2xml(1)
- uniq-table(1)
- yaml2xml(1)
- ref2pmid(1)
- filter-record(1)
- fuse-ranges(1)
- nquire(1)
- filter-genbank(1)
apt-get install ncbi-entrez-direct
Manual
CSV2XML
NAMESYNOPSIS
DESCRIPTION
OPTIONS
SEE ALSO
NAME
csv2xml,fsa2xml,gbf2ref,gbf2xml,ini2xml,json2xml,scn2xml,tbl2xml,toml2xml,yaml2xml - XMLify
SYNOPSIS
csv2xml | scn2xml | tbl2xml [ -set tag ] [ -rec tag ] [ -skip N ] [ -header ] [ -lower | -upper ] [ -indent | -flush ] columnName1 ...
fsa2xml
gbf2ref
gbf2xml
ini2xml
json2xml [ -set tag ] [ -rec tag ] [ -nest flat | recurse | plural | singular | depth | element ]
toml2xml
yaml2xml
DESCRIPTION
These commands all simply invoke corresponding transmute (1) modes; each reads a stream of data from standard input, converts it to XML suitable for -path navigation, and writes the result to standard output. Specifically:
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csv2xml |
corresponds to transmute -c2x , converting comma-separated values to XML. |
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fsa2xml |
corresponds to transmute -f2x , converting FASTA streams to XML. |
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gbf2ref |
corresponds to transmute -g2r , converting from GenBank/GenPept flatfile format to Reference Index XML. |
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gbf2xml |
corresponds to transmute -g2x , converting from GenBank/GenPept flatfile format to INSDSeq XML. |
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ini2xml |
corresponds to transmute -i2x , converting from .ini configuration file format to XML. |
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json2xml |
corresponds to transmute -j2x , converting JSON to XML. |
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scn2xml |
corresponds to transmute -s2x , converting a semicolon-delimited table to XML. |
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tbl2xml |
corresponds to transmute -t2x , converting a tab-delimited table to XML. |
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toml2xml |
corresponds to transmute -m2x , converting from TOML format to XML. |
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yaml2xml |
corresponds to transmute -y2x , converting from YAML format to XML. |
There is also an analogous asn2xml wrapper corresponding to transmute -a2x (converting text ASN.1 to XML), but Debian systems install it to /usr/lib/ncbi-entrez-direct/bin to avoid conflicting with the ncbi-tools-bin package’s asn2xml (1).
OPTIONS
See transmute (1).
SEE ALSO
asn2ref (1), download-flatfile (1), gbf2facds (1), gbf2fsa (1), gbf2info (1), gbf2tbl (1), gene2range (1), gff2xml (1), jsonl2xml(1), ref2pmid (1), refseq-nm-cds (1), transmute (1), xml2fsa (1), xml2tbl (1), xtract (1).