Man page - archive-nmcds(1)
Packages contains this manual
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apt-get install ncbi-entrez-direct
Manual
ARCHIVE-NMCDS
NAMESYNOPSIS
DESCRIPTION
OPTIONS
ENVIRONMENT
SEE ALSO
NAME
archive-nmcds - maintain a local NCBI RefSeq human mRNA archive
SYNOPSIS
archive-nmcds [[ - ][ re ] index ] [[ - ] clean |[ - ] clear |[ - ] scrub |[ - ] scour | [ - ] erase |[ - ] zap ] [ -ftp | -http [ s ]]
DESCRIPTION
archive-nmcds prepares a directory to hold a local NCBI RefSeq human mRNA archive, then downloads a full database dump from NCBI’s servers, organizes the dump into an rchive (1) trie, and notes coding regions’ offsets.
OPTIONS
[ - ][ re ] index
Fully reindex, complete with an inverted index.
[ - ] clean |[ - ] clear
Delete Indices contents and Increment files.
[ - ] scrub
Delete Indices contents, Increment files, and Postings directories.
[ - ] scour
Delete Indices contents, Increment files, and Postings , Data , Archive , and Sentinel directories.
[ - ] erase
Delete Indices contents, Increment files, Postings , Data , Archive , and Sentinel directories, and Extras directory contents.
|
[ - ] zap |
Delete entire archive. |
|||
|
-ftp |
Download needed data via FTP (default). |
-http [ s ]
Download needed data via HTTPS.
ENVIRONMENT
EDIRECT_LOCAL_ARCHIVE
Local archive directory to use; expected to hold an absolute path.
EDIRECT_LOCAL_WORKING
Directory to hold intermediate subtrees; expected to hold an absolute path. Defaults to the local archive directory when not set.
SEE ALSO
archive-nihocc (1), archive-nlmnlp (1), archive-pids (1), archive-pmc (1), archive-pubmed (1), archive-taxonomy (1), nquire (1), pm-clean (1), pm-prepare (1), pm-setup (1), rchive (1), xfetch (1), xfilter (1), xinfo (1), xlink (1), xsearch (1). xtract (1).