Man page - pm-setup(1)

Packages contains this manual

Package:  ncbi-entrez-direct
apt-get install ncbi-entrez-direct

Manuals in package:
• join-into-groups-of(1)
• gbf2ref(1)
• quote-grouped-elements(1)
• disambiguate-nucleotides(1)
• gff-sort(1)
• pma2pme(1)
• pm-collect(1)
• pm-setup(1)
• systematic-mutations(1)
• sort-uniq-count-rank(1)
• archive-pids(1)
• efetch(1)
• pma2apa(1)
• gbf2fsa(1)
• intersect-uid-lists(1)
• skip-if-file-exists(1)
• archive-taxonomy(1)
• jsonl2xml(1)
• efetch.ncbi(1)
• difference-uid-lists(1)
• download-ncbi-data(1)
• snp2tbl(1)
• einfo(1)
• gbf2facds(1)
• tbl2prod(1)
• cit2pmid(1)
• run-ncbi-converter(1)
• args2slice(1)
• xy-plot(1)
• xml2tbl(1)
• archive-nihocc(1)
• fsa2xml(1)
• download-pubmed(1)
• just-top-hits(1)
• sort-uniq-count(1)
• sort-by-length(1)
• json2xml(1)
• filter-stop-words(1)
• archive-nmcds(1)
• print-missing-subranges(1)
• word-at-a-time(1)
• between-two-genes(1)
• esearch(1)
• xfilter(1)
• einfo.ncbi(1)
• efilter(1)
• gbf2info(1)
• pmc2bioc(1)
• download-ncbi-software(1)
• filter-columns(1)
• pm-refresh(1)
• edict(1)
• split-at-intron(1)
• amino-acid-composition(1)
• expand-current(1)
• gbf2xml(1)
• gff2xml(1)
• find-in-gene(1)
• archive-pmc(1)
• download-sequence(1)
• snp2hgvs(1)
• pmc2info(1)
• download-pmc(1)
• bsmp2info(1)
• pm-clean(1)
• esample(1)
• gene2range(1)
• print-columns(1)
• scn2xml(1)
• xfetch(1)
• archive-pubmed(1)
• ds2pme(1)
• tbl2xml(1)
• xml2fsa(1)
• xlink(1)
• download-flatfile(1)
• reorder-columns(1)
• blst2tkns(1)
• exclude-uid-lists(1)
• sort-table(1)
• fuse-segments(1)
• transmute(1)
• combine-uid-lists(1)
• pair-at-a-time(1)
• spdi2tbl(1)
• ecollect(1)
• accn-at-a-time(1)
• custom-index(1)
• gbf2tbl(1)
• align-columns(1)
• asn2ref(1)
• pm-prepare(1)
• elink(1)
• archive-nlmnlp(1)
• xtract(1)
• gm2segs(1)
• epost(1)
• hgvs2spdi(1)
• esummary(1)
• rchive(1)
• refseq-nm-cds(1)
• ini2xml(1)
• xinfo(1)
• xsearch(1)
• csv2xml(1)
• uniq-table(1)
• yaml2xml(1)
• ref2pmid(1)
• filter-record(1)
• fuse-ranges(1)
• nquire(1)
• filter-genbank(1)
Documentations in package:
• ncbi-entrez-direct

Manual

PM-SETUP

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
ENVIRONMENT
SEE ALSO

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NAME

pm-setup - create directories to hold a local NCBI Entrez Direct archive

SYNOPSIS

pm-setup -db database

DESCRIPTION

pm-setup creates directories to hold a local NCBI PubMed archive; unlike pm-prepare (1), it performs no further actions.

OPTIONS

-db database

Specific database to cover.

ENVIRONMENT

EDIRECT_LOCAL_ARCHIVE

Local archive directory to use; expected to hold an absolute path.

SEE ALSO

archive-nihocc (1), archive-nlmnlp (1), archive-nmcds (1), archive-pids (1), archive-pmc (1), archive-pubmed (1), archive-taxonomy (1), pm-prepare (1), rchive (1).

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