Man page - ecollect(1)
Packages contas this manual
- blst2tkns(1)
- pmc2bioc(1)
- hgvs2spdi(1)
- archive-nihocc(1)
- sort-by-length(1)
- print-missing-subranges(1)
- asn2ref(1)
- gene2range(1)
- xfetch(1)
- ini2xml(1)
- filter-genbank(1)
- sort-uniq-count-rank(1)
- archive-pmc(1)
- pair-at-a-time(1)
- xml2tbl(1)
- fuse-ranges(1)
- download-ncbi-data(1)
- jsonl2xml(1)
- epost(1)
- tbl2prod(1)
- find-in-gene(1)
- between-two-genes(1)
- efilter(1)
- gbf2info(1)
- filter-stop-words(1)
- exclude-uid-lists(1)
- archive-pubmed(1)
- print-columns(1)
- transmute(1)
- fsa2xml(1)
- quote-grouped-elements(1)
- esample(1)
- sort-uniq-count(1)
- download-pmc(1)
- pm-setup(1)
- archive-taxonomy(1)
- csv2xml(1)
- expand-current(1)
- esearch(1)
- download-sequence(1)
- archive-nmcds(1)
- reorder-columns(1)
- cit2pmid(1)
- fuse-segments(1)
- archive-pids(1)
- xml2fsa(1)
- scn2xml(1)
- refseq-nm-cds(1)
- elink(1)
- xy-plot(1)
- snp2hgvs(1)
- run-ncbi-converter(1)
- yaml2xml(1)
- gbf2ref(1)
- xinfo(1)
- xlink(1)
- efetch.ncbi(1)
- accn-at-a-time(1)
- bsmp2info(1)
- gbf2facds(1)
- json2xml(1)
- combine-uid-lists(1)
- gbf2fsa(1)
- spdi2tbl(1)
- args2slice(1)
- efetch(1)
- filter-columns(1)
- gbf2xml(1)
- download-pubmed(1)
- archive-nlmnlp(1)
- xtract(1)
- einfo.ncbi(1)
- intersect-uid-lists(1)
- custom-index(1)
- xfilter(1)
- ds2pme(1)
- amino-acid-composition(1)
- pm-clean(1)
- rchive(1)
- ref2pmid(1)
- pm-prepare(1)
- join-into-groups-of(1)
- difference-uid-lists(1)
- word-at-a-time(1)
- uniq-table(1)
- download-ncbi-software(1)
- tbl2xml(1)
- xsearch(1)
- skip-if-file-exists(1)
- nquire(1)
- esummary(1)
- filter-record(1)
- einfo(1)
- sort-table(1)
- edict(1)
- pm-collect(1)
- split-at-intron(1)
- systematic-mutations(1)
- just-top-hits(1)
- pma2pme(1)
- pm-refresh(1)
- ecollect(1)
- snp2tbl(1)
- gbf2tbl(1)
- gm2segs(1)
- disambiguate-nucleotides(1)
- gff-sort(1)
- align-columns(1)
- pmc2info(1)
- gff2xml(1)
- pma2apa(1)
- download-flatfile(1)
apt-get install ncbi-entrez-direct
Manual
| ECOLLECT(1) | NCBI Entrez Direct User's Manual | ECOLLECT(1) |
NAME
ecollect - list NCBI Entrez unique identifiers
SYNOPSIS
ecollect -db name -web str -key N [-days|-reldate N] [-datetype field] [-mindate date] [-maxdate date]
ecollect -db name -query str [-days|-reldate N] [-datetype field] [-mindate date] [-maxdate date]
ecollect -db name -id str...|-rest str|-input file
DESCRIPTION
ecollect lists unique identifiers from NCBI Entrez, either corresponding to a live query or explicitly supplied. In either case, it presents them one per line in numerical order with any duplicates consolidated.
OPTIONS
Source Specification
- -db name
- Entrez database name. Mandatory even when explicitly supplying UIDs.
- -web str
- NCBI WebEnv value corresponding to a previous query, optionally subject to further filtering by date.
- -key N
- That query's number.
- -query str
- Query string.
- -id str ...|-rest str
- Existing UID(s) to format; may be internally delimited by whitespace and any punctuation other than . or _.
- -input file
- Read UIDs from the specified file.
Date Constraint
- -days|-reldate N
- Return only results from the past N days.
- -datetype field
- Which date field (in abbreviated form) to consider.
- -mindate date
- Start of date range.
- -maxdate date
- End of date range.
SEE ALSO
cit2pmid(1), combine-uid-lists(1), difference-uid-lists(1), efetch(1), efilter(1), elink(1), esearch(1), exclude-uid-lists(1), intersect-uid-lists(1), nquire(1), xfetch(1), xfilter(1), xlink(1), xsearch(1).
| 2025-05-26 | NCBI |