Man page - efilter(1)
Packages contains this manual
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apt-get install ncbi-entrez-direct
Manual
EFILTER
NAMESYNOPSIS
DESCRIPTION
OPTIONS
Query Specification
Date Constraint
Publication Filters
Sequence Filters
Gene Filters
SNP Filters
Assembly Filters
Miscellaneous Arguments
SEE ALSO
NAME
efilter - filter and/or sort NCBI Entrez search results
SYNOPSIS
efilter [ -help ] [ -query str ] [ -days N ] [ -datetype field ] [ -mindate date ] [ -maxdate date ] [ -pub type ] [ -journal name ] [ -released when ] [ -country name ] [ -feature type ] [ -location type ] [ -molecule type ] [ -organism type ] [ -source type ] [ -division code ] [ -keyword purpose ] [ -purpose why ] [ -status alive ] [ -type type ] [ -class class ]
DESCRIPTION
efilter filters and/or sorts results from a previous Entrez Direct search.
OPTIONS
Query Specification
-query str
Limit results to those matching the given query string.
Date Constraint
-days N
Keep only results from the past N days.
-datetype field
Which date field (in abbreviated form) to consider.
-mindate date
Start of date range.
-maxdate date
End of date range.
Publication Filters
-pub type
abstract , clinical , english , free , historical , journal , medline , preprint , published , retracted , retraction , review , or structured .
-journal name
pnas , "j bacteriol" , ...
-released when
last_week , last_month , last_year , or prev_years .
Sequence Filters
-country name
usa:minnesota , united_kingdom , "pacific ocean" , ...
-feature type
gene , mrna , cds , mat_peptide , ...
-location type
mitochondrion , chloroplast , plasmid , or plastid .
-molecule type
genomic , mrna , trna , rrna , or ncrna .
-organism type
animals , archaea , bacteria , eukaryotes , fungi , human , insects , mammals , plants , prokaryotes , protists , rodents , viruses , ...
-source type
genbank , insd , pdb , pir , refseq , select , swissprot , or tpa.
-division code
Three-letter GenBank division code: bct , con , env , est , gss , htc , htg , inv , mam , pat , phg , pln , pri , rod , sts , syn , una , vrl , or vrt .
-keyword purpose
-purpose
why
baseline or targeted.
Gene Filters
-status alive
-type
type
coding or pseudo .
SNP Filters
-class class
acceptor , donor , coding , frameshift , indel , intron , missense , nonsense , or synonymous .
Assembly Filters
-status status
latest or replaced .
Miscellaneous Arguments
|
-help |
Print usage information. |
SEE ALSO
combine-uid-lists (1), difference-uid-lists (1), ecollect (1), elink (1), esearch (1), exclude-uid-lists (1), intersect-uid-lists (1), nquire (1), xfilter (1).