Man page - filter-genbank(1)
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- filter-genbank(1)
apt-get install ncbi-entrez-direct
Manual
FILTER-GENBANK
NAMESYNOPSIS
DESCRIPTION
OPTIONS
SEE ALSO
NAME
filter-genbank, filter-record - filter structured files
SYNOPSIS
filter-genbank [ -accession acc | -accessions file ] [ -taxid id | -taxids file ] [ -organism name ] [ -exclude str ] [ -require str ] [ -truncate ]
filter-record [ -pattern str ] [ -exclude str ] [ -require str ] [ -min N ] [ -max N ]
DESCRIPTION
These commands simply invoke corresponding transmute (1) modes; each reads a stream of data from standard input, filters it as desired, and writes the result to standard output. Specifically, filter-genbank corresponds to transmute -gbf , filtering NCBI GenBank/GenPept release flatfiles, and filter-record corresponds to transmute -txf , filtering any text file whose records all start with the same distinct string.
OPTIONS
See transmute (1).
SEE ALSO
transmute (1),