Man page - gff-sort(1)
Packages contains this manual
- join-into-groups-of(1)
- gbf2ref(1)
- quote-grouped-elements(1)
- disambiguate-nucleotides(1)
- gff-sort(1)
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- pm-setup(1)
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- tbl2xml(1)
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- xlink(1)
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- sort-table(1)
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- transmute(1)
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- xtract(1)
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- hgvs2spdi(1)
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- refseq-nm-cds(1)
- ini2xml(1)
- xinfo(1)
- xsearch(1)
- csv2xml(1)
- uniq-table(1)
- yaml2xml(1)
- ref2pmid(1)
- filter-record(1)
- fuse-ranges(1)
- nquire(1)
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apt-get install ncbi-entrez-direct
Manual
GFF-SORT
NAMESYNOPSIS
DESCRIPTION
SEE ALSO
NAME
gff-sort - sort a General Feature Format version 3 file
SYNOPSIS
gff-sort
DESCRIPTION
gff-sort reads a General Feature Format version 3 (GFF3) file from standard input and prints a sorted equivalent to standard output. It sorts according to the following criteria:
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accession (highest priority), case insensitively |
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feature identifier, case insensitively and hierarchically |
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strand (positive first) |
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start position |
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length (longest first) |
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feature key (lowest priority): |
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gene or pseudogene (first) |
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mRNA , primary_transcript , or a recombination site such as C_region |
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CDS |
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exon or intron |
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anything else (last) |
SEE ALSO
gff2xml (1), sort-table (1), transmute (1), xtract (1).