Man page - blst2tkns(1)
Packages contains this manual
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- quote-grouped-elements(1)
- disambiguate-nucleotides(1)
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- gbf2info(1)
- pmc2bioc(1)
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- filter-columns(1)
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- amino-acid-composition(1)
- expand-current(1)
- gbf2xml(1)
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- print-columns(1)
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- archive-pubmed(1)
- ds2pme(1)
- tbl2xml(1)
- xml2fsa(1)
- xlink(1)
- download-flatfile(1)
- reorder-columns(1)
- blst2tkns(1)
- exclude-uid-lists(1)
- sort-table(1)
- fuse-segments(1)
- transmute(1)
- combine-uid-lists(1)
- pair-at-a-time(1)
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- ecollect(1)
- accn-at-a-time(1)
- custom-index(1)
- gbf2tbl(1)
- align-columns(1)
- asn2ref(1)
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- xtract(1)
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- hgvs2spdi(1)
- esummary(1)
- rchive(1)
- refseq-nm-cds(1)
- ini2xml(1)
- xinfo(1)
- xsearch(1)
- csv2xml(1)
- uniq-table(1)
- yaml2xml(1)
- ref2pmid(1)
- filter-record(1)
- fuse-ranges(1)
- nquire(1)
- filter-genbank(1)
Package: ncbi-entrez-direct
apt-get install ncbi-entrez-direct
apt-get install ncbi-entrez-direct
Manuals in package:
Documentations in package:
Manual
BLST2TKNS
NAMESYNOPSIS
DESCRIPTION
SEE ALSO
NAME
blst2tkns - tokenize XML-formatted magicblast output
SYNOPSIS
blst2tkns
DESCRIPTION
blst2tkns reads XML-formatted magicblast output from standard input and summarizes details on standard output in a tab-delimited two-column key/value table.
NB: At the time of this writing, magicblast cannot produce suitable XML output itself; instead, you can request ASN.1 output via -outfmt asn and pipe the result through transmute -a2x .
SEE ALSO
split-at-intron (1), transmute (1).