Man page - gm2segs(1)
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Package: ncbi-entrez-direct
apt-get install ncbi-entrez-direct
apt-get install ncbi-entrez-direct
Manuals in package:
Documentations in package:
Manual
GM2SEGS
NAMESYNOPSIS
DESCRIPTION
OPTIONS
SEE ALSO
NAME
gm2segs - present GeneMachine BLAST aligments in tabular form
SYNOPSIS
gm2segs [ -0-based | -zero-based | -1-based | -one-based | -ucsc-based ]
DESCRIPTION
gm2segs reads BLAST alignments from GeneMachine from standard input and writes a sorted table of their hits’ coordinates to standard output.
OPTIONS
-0-based | -zero-based
Report closed intervals in zero-based coordinates.
-1-based | -one-based
Report closed intervals in one-based coordinates (default).
-ucsc-based
Report half-open intervals in zero-based coordinates.
SEE ALSO
xtract (1).