Man page - gt-tallymer-search(1)
Packages contas this manual
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- gt-mmapandread(1)
- gt-gff3(1)
- gt-ltrdigest(1)
- gt-encseq(1)
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- gt-encseq-decode(1)
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- gt-encseq-bitextract(1)
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- gt-tallymer(1)
- gt-sequniq(1)
- gt-id_to_md5(1)
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- gt-seqtranslate(1)
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- gt(1)
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- gt-gtf_to_gff3(1)
- gt-eval(1)
- gt-encseq-check(1)
- gt-loccheck(1)
- gt-inlineseq_split(1)
Package: genometools
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Manual
| GT-TALLYMER-SEARCH(1) | GenomeTools Manual | GT-TALLYMER-SEARCH(1) |
NAME
gt-tallymer-search - Search a set of k-mers in an index constructed by ``gt tallymer mkindex''.
SYNOPSIS
gt tallymer search [options] -tyr tallymer-index -q queryfile0 [queryfile1..] [options]
DESCRIPTION
-tyr [string]
specify tallymer-index (default: undefined)
-q
specify query file names
-strand [string]
specify the strand to be searched: use f (for forward
strand) or p (for reverse complemented strand) or fp (for both); default is f
(default: f)
-output
specify output flags (qseqnum, qpos, counts,
sequence)
-v [yes|no]
be verbose (default: no)
-help
display help and exit
-version
display version information and exit
REPORTING BUGS
Report bugs to <kurtz@zbh.uni-hamburg.de>.
| 04/27/2024 | GenomeTools 1.6.5 |