Man page - gt-matstat(1)

Packages contains this manual

Package:  genometools
apt-get install genometools

Manuals in package:
• gt-readjoiner(1)
• gt-cds(1)
• gt-extractfeat(1)
• gt-dupfeat(1)
• gt-select(1)
• gt-encseq(1)
• gt-matstat(1)
• gt-md5_to_id(1)
• gt-seqmutate(1)
• gt-seqtranslate(1)
• gt-mkfeatureindex(1)
• gt-dot(1)
• gt-compreads-decompress(1)
• gt-compreads-refcompress(1)
• gt-condenseq(1)
• gt-readjoiner-prefilter(1)
• gt-seqstat(1)
• gt-readjoiner-overlap(1)
• gt-splicesiteinfo(1)
• gt-prebwt(1)
• gt-extractseq(1)
• gt-encseq2spm(1)
• gt-convertseq(1)
• gt-clean(1)
• gt-encseq-encode(1)
• gt-ltrclustering(1)
• gt-seq(1)
• gt-ltrharvest(1)
• gt-sequniq(1)
• gt-inlineseq_split(1)
• gt-mergefeat(1)
• gt-splitfasta(1)
• gt-gtf_to_gff3(1)
• gt-ltrdigest(1)
• gt-seqfilter(1)
• gt-featureindex(1)
• gt-inlineseq_add(1)
• gt-speck(1)
• gt-mmapandread(1)
• gt-tallymer-mkindex(1)
• gt-seed_extend(1)
• gt-hop(1)
• gt-sketch(1)
• gt-repfind(1)
• gt-shulengthdist(1)
• gt-sketch_page(1)
• gt-gff3(1)
• gt-stat(1)
• gt-gff3validator(1)
• gt-packedindex(1)
• gt-merge(1)
• gt-wtree(1)
• gt-encseq-bitextract(1)
• gt-seqids(1)
• gt-readjoiner-assembly(1)
• gt-tirvish(1)
• gt-uniquesub(1)
• gt-encseq-sample(1)
• gt-chseqids(1)
• gt-compreads-compress(1)
• gt-scriptfilter(1)
• gt-seqtransform(1)
• gt-eval(1)
• gt-genomediff(1)
• gt-congruence(1)
• gt-chain2dim(1)
• gt-tallymer(1)
• gt-tagerator(1)
• gt-loccheck(1)
• gt-encseq-info(1)
• gt-snpper(1)
• gt-bed_to_gff3(1)
• gt(1)
• gt-matchtool(1)
• gt-simreads(1)
• gt-csa(1)
• gt-tallymer-occratio(1)
• gt-encseq-check(1)
• gt-tallymer-search(1)
• gt-encseq-bench(1)
• gt-shredder(1)
• gt-gff3_to_gtf(1)
• gt-orffinder(1)
• gt-encseq-decode(1)
• gt-compreads(1)
• gt-encseq-md5(1)
• gt-uniq(1)
• gt-congruence-spacedseed(1)
• gt-id_to_md5(1)
• gt-seqorder(1)
• gt-compreads-refdecompress(1)
• gt-fingerprint(1)
• gt-fastq_sample(1)
• gt-interfeat(1)
Documentations in package:
• genometools

Manual

GT-MATSTAT

NAME
SYNOPSIS
DESCRIPTION
ADDITIONAL INFORMATION
REPORTING BUGS

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NAME

gt-matstat - Compute matching statistics.

SYNOPSIS

gt matstat [options ...] -query queryfile [...]

DESCRIPTION

-fmi [ string ]

specify fmindex (default: undefined)

-esa [ string ]

specify suffix array (default: undefined)

-pck [ string ]

specify packed index (default: undefined)

-query

specify queryfiles

-min [ value ]

only output length if >= given minimum length (default: 0)

-max [ value ]

only output length if ⇐ given maximum length (default: 0)

-output

set output flags (sequence, querypos, subjectpos)

-help

display help and exit

-version

display version information and exit

ADDITIONAL INFORMATION

For detailed information, please refer to the manual of matstat.

REPORTING BUGS

Report bugs to <kurtz@zbh.uni-hamburg.de>.

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