Man page - gt-inlineseq_add(1)
Packages contains this manual
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- gt-cds(1)
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- gt-congruence-spacedseed(1)
- gt-id_to_md5(1)
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apt-get install genometools
Manual
GT-INLINESEQ_ADD
NAMESYNOPSIS
DESCRIPTION
REPORTING BUGS
NAME
gt-inlineseq_add - Adds inline sequences from external source to GFF3 input.
SYNOPSIS
gt inlineseq_add [options] [GFF3_file ...]
DESCRIPTION
-seqfile [ filename ]
set the sequence file from which to take the sequences (default: undefined)
-encseq [ filename ]
set the encoded sequence indexname from which to take the sequences (default: undefined)
-seqfiles
set the sequence files from which to extract the features use -- to terminate the list of sequence files
-matchdesc [ yes|no ]
search the sequence descriptions from the input files for the desired sequence IDs (in GFF3), reporting the first match (default: no)
-matchdescstart [ yes|no ]
exactly match the sequence descriptions from the input files for the desired sequence IDs (in GFF3) from the beginning to the first whitespace (default: no)
-usedesc [ yes|no ]
use sequence descriptions to map the sequence IDs (in GFF3) to actual sequence entries. If a description contains a sequence range (e.g., III:1000001..2000000), the first part is used as sequence ID ( III ) and the first range position as offset ( 1000001 ) (default: no)
-regionmapping [ string ]
set file containing sequence-region to sequence file mapping (default: undefined)
-o [ filename ]
redirect output to specified file (default: undefined)
-gzip [ yes|no ]
write gzip compressed output file (default: no)
-bzip2 [ yes|no ]
write bzip2 compressed output file (default: no)
-force [ yes|no ]
force writing to output file (default: no)
-help
display help and exit
-version
display version information and exit
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.