Man page - gt-compreads-decompress(1)
Packages contains this manual
- gt-readjoiner(1)
- gt-cds(1)
- gt-extractfeat(1)
- gt-dupfeat(1)
- gt-select(1)
- gt-encseq(1)
- gt-matstat(1)
- gt-md5_to_id(1)
- gt-seqmutate(1)
- gt-seqtranslate(1)
- gt-mkfeatureindex(1)
- gt-dot(1)
- gt-compreads-decompress(1)
- gt-compreads-refcompress(1)
- gt-condenseq(1)
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- gt-seqstat(1)
- gt-readjoiner-overlap(1)
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- gt-prebwt(1)
- gt-extractseq(1)
- gt-encseq2spm(1)
- gt-convertseq(1)
- gt-clean(1)
- gt-encseq-encode(1)
- gt-ltrclustering(1)
- gt-seq(1)
- gt-ltrharvest(1)
- gt-sequniq(1)
- gt-inlineseq_split(1)
- gt-mergefeat(1)
- gt-splitfasta(1)
- gt-gtf_to_gff3(1)
- gt-ltrdigest(1)
- gt-seqfilter(1)
- gt-featureindex(1)
- gt-inlineseq_add(1)
- gt-speck(1)
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- gt-tallymer-mkindex(1)
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- gt-sketch(1)
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- gt-gff3(1)
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- gt-merge(1)
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- gt-seqids(1)
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- gt-tirvish(1)
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- gt-encseq-sample(1)
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- gt-scriptfilter(1)
- gt-seqtransform(1)
- gt-eval(1)
- gt-genomediff(1)
- gt-congruence(1)
- gt-chain2dim(1)
- gt-tallymer(1)
- gt-tagerator(1)
- gt-loccheck(1)
- gt-encseq-info(1)
- gt-snpper(1)
- gt-bed_to_gff3(1)
- gt(1)
- gt-matchtool(1)
- gt-simreads(1)
- gt-csa(1)
- gt-tallymer-occratio(1)
- gt-encseq-check(1)
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- gt-encseq-bench(1)
- gt-shredder(1)
- gt-gff3_to_gtf(1)
- gt-orffinder(1)
- gt-encseq-decode(1)
- gt-compreads(1)
- gt-encseq-md5(1)
- gt-uniq(1)
- gt-congruence-spacedseed(1)
- gt-id_to_md5(1)
- gt-seqorder(1)
- gt-compreads-refdecompress(1)
- gt-fingerprint(1)
- gt-fastq_sample(1)
- gt-interfeat(1)
apt-get install genometools
Manual
GT-COMPREADS-DECOM
NAMESYNOPSIS
DESCRIPTION
REPORTING BUGS
NAME
gt-compreads-decompress - Decodes a file of compressed reads.
SYNOPSIS
gt compreads decompress [option ...] (-file file)
DESCRIPTION
-v [ yes|no ]
be verbose (default: no)
-descs [ yes|no ]
enable description decoding (default: no)
-file [ string ]
specify base name of files containing HCR. (default: undefined)
-name [ string ]
specify base name for decoded hcr (suffix will be ".fastq") (default: undefined)
-smap [ string ]
specify file containing alphabetdescription (file must be an .al1 file). If "-smap" is not set, dna alphabet is used. (default: undefined)
-range [ start end ]
decode multiple consecutive reads. If range is not specified, the entire file will be decoded. (default: undefined)
-width [ value ]
set width of output, 0 disables formatting. line breaks in quality strings can cause problems with parsers, use with care (default: 0)
-help
display help and exit
-version
display version information and exit
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.