Man page - gt-bed_to_gff3(1)
Packages contains this manual
- gt-readjoiner(1)
- gt-cds(1)
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- gt-dupfeat(1)
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- gt-tagerator(1)
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- gt-encseq-info(1)
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- gt-bed_to_gff3(1)
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- gt-encseq-md5(1)
- gt-uniq(1)
- gt-congruence-spacedseed(1)
- gt-id_to_md5(1)
- gt-seqorder(1)
- gt-compreads-refdecompress(1)
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- gt-fastq_sample(1)
- gt-interfeat(1)
apt-get install genometools
Manual
GT-BED_TO_GFF3
NAMESYNOPSIS
DESCRIPTION
REPORTING BUGS
NAME
gt-bed_to_gff3 - Parse BED file and convert it to GFF3.
SYNOPSIS
gt bed_to_gff3 [BED_file]
DESCRIPTION
-featuretype [ string ]
Set type of parsed BED features (default: BED_feature)
-thicktype [ string ]
Set type of parsed thick BED features (default: BED_thick_feature)
-blocktype [ string ]
Set type of parsed BED blocks (default: BED_block)
-o [ filename ]
redirect output to specified file (default: undefined)
-gzip [ yes|no ]
write gzip compressed output file (default: no)
-bzip2 [ yes|no ]
write bzip2 compressed output file (default: no)
-force [ yes|no ]
force writing to output file (default: no)
-help
display help and exit
-version
display version information and exit
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.