Man page - gt-encseq-sample(1)
Packages contains this manual
- gt-readjoiner(1)
- gt-cds(1)
- gt-extractfeat(1)
- gt-dupfeat(1)
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- gt-encseq(1)
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- gt-seqmutate(1)
- gt-seqtranslate(1)
- gt-mkfeatureindex(1)
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- gt-compreads-refcompress(1)
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- gt-encseq2spm(1)
- gt-convertseq(1)
- gt-clean(1)
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- gt-ltrclustering(1)
- gt-seq(1)
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- gt-sequniq(1)
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- gt-gtf_to_gff3(1)
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- gt-inlineseq_add(1)
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- gt-tirvish(1)
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- gt-encseq-sample(1)
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- gt-seqtransform(1)
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- gt-tagerator(1)
- gt-loccheck(1)
- gt-encseq-info(1)
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- gt-bed_to_gff3(1)
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- gt-tallymer-occratio(1)
- gt-encseq-check(1)
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- gt-encseq-decode(1)
- gt-compreads(1)
- gt-encseq-md5(1)
- gt-uniq(1)
- gt-congruence-spacedseed(1)
- gt-id_to_md5(1)
- gt-seqorder(1)
- gt-compreads-refdecompress(1)
- gt-fingerprint(1)
- gt-fastq_sample(1)
- gt-interfeat(1)
apt-get install genometools
Manual
GT-ENCSEQ-SAMPLE
NAMESYNOPSIS
DESCRIPTION
REPORTING BUGS
NAME
gt-encseq-sample - Decode/extract encoded sequences by random choice.
SYNOPSIS
gt encseq sample (sequence_file|indexname)
DESCRIPTION
-mirrored [ yes|no ]
virtually append the reverse complement of each sequence (default: no)
-lossless [ yes|no ]
allow lossless original sequence retrieval (default: no)
-dir [ string ]
specify reading direction (fwd, cpl, rev, rcl) (default: fwd)
-singlechars [ yes|no ]
do not use a GtEncseqReader but access each sequence character separately (default: no)
-length [ value ]
minimum length to be extracted (default: undefined)
-seqrange [ start end ]
extract multiple consecutive sequences (default: undefined)
-output [ ... ]
specify output format (choose from fasta|concat) (default: fasta)
-sepchar [ string ]
specify character to print as GT_SEPARATOR (default: |)
-help
display help for basic options and exit
-help+
display help for all options and exit
-version
display version information and exit
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.