Man page - gt-matchtool(1)
Packages contains this manual
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- gt-congruence-spacedseed(1)
- gt-id_to_md5(1)
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apt-get install genometools
Manual
GT-MATCHTOOL
NAMESYNOPSIS
DESCRIPTION
REPORTING BUGS
NAME
gt-matchtool - Parse match formats and/or invoke matching tools.
SYNOPSIS
gt matchtool [option ...]
DESCRIPTION
-type [ ... ]
choose match file format: OPENMATCH: open match format, e.g. vmatch BLASTOUT : tabular BLAST output (-m 8) BLASTALLP: invoke BLASTALL with blastp BLASTALLN: invoke BLASTALL with blastn BLASTP : invoke blastp BLASTN : invoke blastn LAST : invoke LAST SW : use Smith-Waterman (default: OPENMATCH)
-matchfile [ filename ]
set input file name (default: undefined)
-db [ filename ]
set database file name (default: undefined)
-swminlen [ value ]
set minimum required alignment length (for Smith-Waterman alignment) (default: 10)
-swmaxedist [ value ]
set maximum allowed edit distance (for Smith-Waterman alignment) (default: 0)
-query [ filename ]
set query file name (default: undefined)
-help
display help and exit
-version
display version information and exit
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.