Man page - gt-encseq-decode(1)
Packages contains this manual
- gt-readjoiner(1)
- gt-cds(1)
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- gt-dupfeat(1)
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- gt-seqmutate(1)
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- gt-seq(1)
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- gt-sequniq(1)
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- gt-tagerator(1)
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- gt-encseq-info(1)
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- gt-encseq-check(1)
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- gt-encseq-decode(1)
- gt-compreads(1)
- gt-encseq-md5(1)
- gt-uniq(1)
- gt-congruence-spacedseed(1)
- gt-id_to_md5(1)
- gt-seqorder(1)
- gt-compreads-refdecompress(1)
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- gt-fastq_sample(1)
- gt-interfeat(1)
apt-get install genometools
Manual
GT-ENCSEQ-DECODE
NAMESYNOPSIS
DESCRIPTION
REPORTING BUGS
NAME
gt-encseq-decode - Decode/extract encoded sequences.
SYNOPSIS
gt encseq decode (sequence_file|indexname)
DESCRIPTION
-mirrored [ yes|no ]
virtually append the reverse complement of each sequence (default: no)
-lossless [ yes|no ]
allow lossless original sequence retrieval (default: no)
-dir [ string ]
specify reading direction (fwd, cpl, rev, rcl) (default: fwd)
-singlechars [ yes|no ]
do not use a GtEncseqReader but access each sequence character separately (default: no)
-seq [ value ]
extract sequence identified by its number (default: undefined)
-seqrange [ start end ]
extract multiple consecutive sequences (default: undefined)
-output [ ... ]
specify output format (choose from fasta|concat) (default: fasta)
-range [ start end ]
concatenated range to extract (implies -output concat ) (default: undefined)
-sepchar [ string ]
specify character to print as GT_SEPARATOR (default: |)
-help
display help for basic options and exit
-help+
display help for all options and exit
-version
display version information and exit
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.