Man page - cnvkit-target(1)
Packages contains this manual
- cnvkit-import-theta(1)
- cnvkit-coverage(1)
- cnvkit-metrics(1)
- cnvkit-import-seg(1)
- cnvkit-export(1)
- cnvkit-breaks(1)
- cnvkit-fix(1)
- cnvkit-segmetrics(1)
- cnvkit-batch(1)
- cnvkit-import-rna(1)
- cnvkit-bintest(1)
- cnvkit-diagram(1)
- cnvkit-call(1)
- cnvkit-autobin(1)
- cnvkit-access(1)
- cnvkit-antitarget(1)
- cnvkit-sex(1)
- cnvkit-segment(1)
- cnvkit-genemetrics(1)
- cnvkit-heatmap(1)
- cnvkit-target(1)
- cnvkit-import-picard(1)
- cnvkit-reference(1)
- cnvkit-scatter(1)
apt-get install cnvkit
Manual
CNVKIT_TARGET
NAMEDESCRIPTION
positional arguments:
options:
NAME
cnvkit_target - Transform bait intervals into targets more suitable for CNVkit.
DESCRIPTION
usage: cnvkit.py
target [-h] [--annotate ANNOTATE] [--short-names] [--split]
[-a AVG_SIZE] [-o FILENAME]
interval
positional arguments:
interval
BED or interval file listing the targeted regions.
options:
-h , --help
show this help message and exit
--annotate ANNOTATE
Use gene models from this file to assign names to the target regions. Format: UCSC refFlat.txt or ensFlat.txt file (preferred), or BED, interval list, GFF, or similar.
--short-names
Reduce multi-accession bait labels to be short and consistent.
--split
Split large tiled intervals into smaller, consecutive targets.
-a AVG_SIZE, --avg-size AVG_SIZE
Average size of split target bins (results are approximate). [Default: 266.6666666666667]
-o FILENAME, --output FILENAME
Output file name.