Man page - cnvkit-target(1)
Packages contas this manual
- cnvkit-import-seg(1)
- cnvkit-breaks(1)
- cnvkit-heatmap(1)
- cnvkit-import-theta(1)
- cnvkit-autobin(1)
- cnvkit-sex(1)
- cnvkit-diagram(1)
- cnvkit-reference(1)
- cnvkit-genemetrics(1)
- cnvkit-segment(1)
- cnvkit-scatter(1)
- cnvkit-target(1)
- cnvkit-call(1)
- cnvkit-batch(1)
- cnvkit-metrics(1)
- cnvkit-segmetrics(1)
- cnvkit-coverage(1)
- cnvkit-export(1)
- cnvkit-import-picard(1)
- cnvkit-fix(1)
- cnvkit-bintest(1)
- cnvkit-import-rna(1)
- cnvkit-antitarget(1)
- cnvkit-access(1)
Package: cnvkit
apt-get install cnvkit
apt-get install cnvkit
Manuals in package:
Documentations in package:
Manual
| CNVKIT_TARGET(1) | User Commands | CNVKIT_TARGET(1) |
NAME
cnvkit_target - Transform bait intervals into targets more suitable for CNVkit.
DESCRIPTION
usage: cnvkit.py target [-h] [--annotate ANNOTATE] [--short-names] [--split]
- [-a AVG_SIZE] [-o FILENAME]
- interval
positional arguments:
- interval
- BED or interval file listing the targeted regions.
options:
- -h, --help
- show this help message and exit
- --annotate ANNOTATE
- Use gene models from this file to assign names to the target regions. Format: UCSC refFlat.txt or ensFlat.txt file (preferred), or BED, interval list, GFF, or similar.
- --short-names
- Reduce multi-accession bait labels to be short and consistent.
- --split
- Split large tiled intervals into smaller, consecutive targets.
- -a AVG_SIZE, --avg-size AVG_SIZE
- Average size of split target bins (results are approximate). [Default: 266.6666666666667]
- -o FILENAME, --output FILENAME
- Output file name.
| July 2023 | cnvkit.py target 0.9.10 |