Man page - cnvkit-import-seg(1)
Packages contains this manual
- cnvkit-import-theta(1)
- cnvkit-coverage(1)
- cnvkit-metrics(1)
- cnvkit-import-seg(1)
- cnvkit-export(1)
- cnvkit-breaks(1)
- cnvkit-fix(1)
- cnvkit-segmetrics(1)
- cnvkit-batch(1)
- cnvkit-import-rna(1)
- cnvkit-bintest(1)
- cnvkit-diagram(1)
- cnvkit-call(1)
- cnvkit-autobin(1)
- cnvkit-access(1)
- cnvkit-antitarget(1)
- cnvkit-sex(1)
- cnvkit-segment(1)
- cnvkit-genemetrics(1)
- cnvkit-heatmap(1)
- cnvkit-target(1)
- cnvkit-import-picard(1)
- cnvkit-reference(1)
- cnvkit-scatter(1)
apt-get install cnvkit
Manual
CNVKIT_IMPORT-SEG
NAMEDESCRIPTION
positional arguments:
options:
NAME
cnvkit_import-seg - Convert a SEG file to CNVkit .cns files.
DESCRIPTION
usage: cnvkit.py
import-seg [-h] [-c CHROMOSOMES] [-p PREFIX] [--from-log10]
[-d DIRECTORY]
segfile
positional arguments:
segfile
Input file in SEG format. May contain multiple samples.
options:
-h , --help
show this help message and exit
-c CHROMOSOMES, --chromosomes CHROMOSOMES
Mapping of chromosome indexes to names. Syntax: "from1:to1,from2:to2". Or use "human" for the preset: "23:X,24:Y,25:M".
-p PREFIX, --prefix PREFIX
Prefix to add to chromosome names (e.g ’chr’ to rename ’8’ in the SEG file to ’chr8’ in the output).
--from-log10
Convert base-10 logarithm values in the input to base-2 logs.
-d DIRECTORY, --output-dir DIRECTORY
Output directory name.