Man page - cnvkit-import-picard(1)
Packages contas this manual
- cnvkit-import-seg(1)
- cnvkit-breaks(1)
- cnvkit-heatmap(1)
- cnvkit-import-theta(1)
- cnvkit-autobin(1)
- cnvkit-sex(1)
- cnvkit-diagram(1)
- cnvkit-reference(1)
- cnvkit-genemetrics(1)
- cnvkit-segment(1)
- cnvkit-scatter(1)
- cnvkit-target(1)
- cnvkit-call(1)
- cnvkit-batch(1)
- cnvkit-metrics(1)
- cnvkit-segmetrics(1)
- cnvkit-coverage(1)
- cnvkit-export(1)
- cnvkit-import-picard(1)
- cnvkit-fix(1)
- cnvkit-bintest(1)
- cnvkit-import-rna(1)
- cnvkit-antitarget(1)
- cnvkit-access(1)
Package: cnvkit
apt-get install cnvkit
apt-get install cnvkit
Manuals in package:
Documentations in package:
Manual
| CNVKIT_IMPORT-PICARD(1) | User Commands | CNVKIT_IMPORT-PICARD(1) |
NAME
cnvkit_import-picard - Convert Picard CalculateHsMetrics tabular output to CNVkit .cnn files.
The input file is generated by the PER_TARGET_COVERAGE option in the
CalculateHsMetrics script in Picard tools.
If 'antitarget' is in the input filename, the generated output filename will
have the suffix '.antitargetcoverage.cnn', otherwise
'.targetcoverage.cnn'.
DESCRIPTION
usage: cnvkit.py import-picard [-h] [-d DIRECTORY] targets [targets ...]
positional arguments:
- targets
- Sample coverage .csv files (target and antitarget).
options:
- -h, --help
- show this help message and exit
- -d DIRECTORY, --output-dir DIRECTORY
- Output directory name.
| July 2023 | cnvkit.py import-picard 0.9.10 |