Man page - cnvkit-sex(1)
Packages contains this manual
- cnvkit-import-theta(1)
- cnvkit-coverage(1)
- cnvkit-metrics(1)
- cnvkit-import-seg(1)
- cnvkit-export(1)
- cnvkit-breaks(1)
- cnvkit-fix(1)
- cnvkit-segmetrics(1)
- cnvkit-batch(1)
- cnvkit-import-rna(1)
- cnvkit-bintest(1)
- cnvkit-diagram(1)
- cnvkit-call(1)
- cnvkit-autobin(1)
- cnvkit-access(1)
- cnvkit-antitarget(1)
- cnvkit-sex(1)
- cnvkit-segment(1)
- cnvkit-genemetrics(1)
- cnvkit-heatmap(1)
- cnvkit-target(1)
- cnvkit-import-picard(1)
- cnvkit-reference(1)
- cnvkit-scatter(1)
Package: cnvkit
apt-get install cnvkit
apt-get install cnvkit
Manuals in package:
Documentations in package:
Manual
CNVKIT_SEX
NAMEDESCRIPTION
positional arguments:
options:
NAME
cnvkit_sex - Guess samples’ sex from the relative coverage of chromosomes X and Y.
DESCRIPTION
usage: cnvkit.py sex [-h] [-y] [-o FILENAME] filenames [filenames ...]
positional arguments:
filenames
Copy number or copy ratio files (*.cnn, *.cnr).
options:
-h , --help
show this help message and exit
-y , --male-reference , --haploid-x-reference
Assume inputs were normalized to a male reference (i.e. female samples will have +1 log-coverage of chrX; otherwise male samples would have -1 chrX).
-o FILENAME, --output FILENAME
Output table file name.