Man page - cnvkit-breaks(1)
Packages contains this manual
- cnvkit-import-theta(1)
- cnvkit-coverage(1)
- cnvkit-metrics(1)
- cnvkit-import-seg(1)
- cnvkit-export(1)
- cnvkit-breaks(1)
- cnvkit-fix(1)
- cnvkit-segmetrics(1)
- cnvkit-batch(1)
- cnvkit-import-rna(1)
- cnvkit-bintest(1)
- cnvkit-diagram(1)
- cnvkit-call(1)
- cnvkit-autobin(1)
- cnvkit-access(1)
- cnvkit-antitarget(1)
- cnvkit-sex(1)
- cnvkit-segment(1)
- cnvkit-genemetrics(1)
- cnvkit-heatmap(1)
- cnvkit-target(1)
- cnvkit-import-picard(1)
- cnvkit-reference(1)
- cnvkit-scatter(1)
Package: cnvkit
apt-get install cnvkit
apt-get install cnvkit
Manuals in package:
Documentations in package:
Manual
CNVKIT_BREAKS
NAMEDESCRIPTION
positional arguments:
options:
NAME
cnvkit_breaks - List the targeted genes in which a copy number breakpoint occurs.
DESCRIPTION
usage: cnvkit.py breaks [-h] [-m MIN_PROBES] [-o FILENAME] filename segment
positional arguments:
filename
Processed sample coverage data file (*.cnr), the output of the ’fix’ sub-command.
segment
Segmentation calls (.cns), the output of the ’segment’ command).
options:
-h , --help
show this help message and exit
-m MIN_PROBES, --min-probes MIN_PROBES
Minimum number of within-gene probes on both sides of a breakpoint to report it. [Default: 1]
-o FILENAME, --output FILENAME
Output table file name.