Man page - cnvkit-metrics(1)
Packages contas this manual
- cnvkit-import-seg(1)
- cnvkit-breaks(1)
- cnvkit-heatmap(1)
- cnvkit-import-theta(1)
- cnvkit-autobin(1)
- cnvkit-sex(1)
- cnvkit-diagram(1)
- cnvkit-reference(1)
- cnvkit-genemetrics(1)
- cnvkit-segment(1)
- cnvkit-scatter(1)
- cnvkit-target(1)
- cnvkit-call(1)
- cnvkit-batch(1)
- cnvkit-metrics(1)
- cnvkit-segmetrics(1)
- cnvkit-coverage(1)
- cnvkit-export(1)
- cnvkit-import-picard(1)
- cnvkit-fix(1)
- cnvkit-bintest(1)
- cnvkit-import-rna(1)
- cnvkit-antitarget(1)
- cnvkit-access(1)
Package: cnvkit
apt-get install cnvkit
apt-get install cnvkit
Manuals in package:
Documentations in package:
Manual
| CNVKIT_METRICS(1) | User Commands | CNVKIT_METRICS(1) |
NAME
cnvkit_metrics - Compute coverage deviations and other metrics for self-evaluation.
DESCRIPTION
usage: cnvkit.py metrics [-h] [-s SEGMENTS [SEGMENTS ...]]
- [--drop-low-coverage] [-o FILENAME]
- cnarrays [cnarrays ...]
positional arguments:
- cnarrays
- One or more bin-level coverage data files (*.cnn, *.cnr).
options:
- -h, --help
- show this help message and exit
- -s SEGMENTS [SEGMENTS ...], --segments SEGMENTS [SEGMENTS ...]
- One or more segmentation data files (*.cns, output of the 'segment' command). If more than one file is given, the number must match the coverage data files, in which case the input files will be paired together in the given order. Otherwise, the same segments will be used for all coverage files.
- --drop-low-coverage
- Drop very-low-coverage bins before calculations to reduce negative "fat tail" of bin log2 values in poorquality tumor samples.
- -o FILENAME, --output FILENAME
- Output table file name.
| July 2023 | cnvkit.py metrics 0.9.10 |